[maker-devel] Does maker support muti-processing for a single long fasta sequence using openMPI?

[Carson Holt]

Yes. It will divide contigs into chunks the same size as the max_dna_len parameter.

—Carson

Sent from my iPhone

> On Oct 17, 2020, at 12:48 AM, Xu, taosheng <taosheng.x at gmail.com> wrote:
> 
> 
> Dear Maker Development Team,
> I wonder whether maker supports parallel processing for a single long genome sequence?
> 
> When I submit my maker task using openMPI with multiple cpus (like, mpiexec -n 40  maker) to annotate a single long genome sequence, always only one maker with 4 rmblast run. The other cpus is on idle.
> 
> I want to use the maker parallel processing with openMPI to speed up a single ultra-long genome sequence annotation.
> 
> Best regards,
> Taosheng
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