[maker-devel] Maker annotation result contain 10% of gene with incorrect start or stop codon

[廖家緯]

Hi maker-devel group,

I used the maker with SNAP and Augustus for annotating a green algae
genome. I always set the 'always_complete=1'  from the first round of
annotation.

After Augustus training, I still get around 1111 and 208 genes that don't
have the correct start and stop codon. (Total annotated gene number is
12696)

I provided the close species proteome and the green algae its own RNA-seq
data for EST hint.

Does that make sense? Does there have any way to improve the result or fix
the incorrect start and stop codon for those gene?

best,
Chai-Wei Liao

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Chia-Wei Liao 廖家緯

Research Assistant

Institute of Molecular Biology,

Academia Sinica, Taipei City, Taiwan

Phone: 886-2-2789-9216 (Lab)
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