[maker-devel] ERROR: Failed while processing all repeats

[Inf Bio]

Dear Developers,

I've researched all available forums and tried to resolve this recurring
error in maker:

processing all repeats
in cluster::shadow_cluster...
Died at /home/user/bin/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm line
188.
--> rank=19, hostname=m30g4
ERROR: Failed while processing all repeats
ERROR: Chunk failed at level:3, tier_type:1

So far, I have tried: reformatting my gff file including purify script from
Carson, Daren Card's script, and agat; uninstalled and reinstalled
ncbi-blast+ and updated path; reinstated RMBlast path in repeatmasker;
changed max_dna_length to 300000; set clean_try=1; replaced RepeatMasker.pm.

However, none of the above helped get rid of the issue. I cannot see what
is wrong with my gff. Can you please help?

thank you.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20210319/5a0e0d73/attachment-0002.html>