[maker-devel] genemark-es training on masked genome

[Mack, Brian - ARS]

Hi,

I'm using MAKER for a fungal genome and I was wondering if it is recommended to train genemark-es on a masked genome? If so, would running just the repeat masking step with MAKER and using the masked files from the "Void" directories be appropriate (cat *output/*datastore/*/*/*/*Void*/query.masked.fasta > masked_genome.fasta) ?

Thanks,
Brian




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