From maker-devel at yandell-lab.org  Tue Apr 26 08:23:25 2022
From: maker-devel at yandell-lab.org (maker-devel at yandell-lab.org)
Date: Tue, 26 Apr 2022 14:23:25 -0000
Subject: [maker-devel] <p><a
 href="https://otr-online.ru/go/?url=%68%74%74%70%73%3a%2f%2f%6c%6f%63%61%6c%67%69%72%6c%70%6c%61%63%65%2e%6c%69%66%65%2f%3f%75%3d%32%76%74%70%64%30%64%26%6f%3d%79%77%75%67%75%75%39%26%6d%3d%31%26%6b%71%6a%35"><img
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Message-ID: <33DCFD09-1076-419C-B369-DCF8B6982DA4@jasminecorp.net>



 Hi ylj82zf1,

 <p><a href="https://otr-online.ru/go/?url=%68%74%74%70%73%3a%2f%2f%6c%6f%63%61%6c%67%69%72%6c%70%6c%61%63%65%2e%6c%69%66%65%2f%3f%75%3d%32%76%74%70%64%30%64%26%6f%3d%79%77%75%67%75%75%39%26%6d%3d%31%26%6b%71%6a%35"><img src="http://insta-sex.com/app/img/offers/tube/chat.png"></a></p> Thought that this page will be of interest to you
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From wangchen236470 at gmail.com  Thu Apr 21 10:54:32 2022
From: wangchen236470 at gmail.com (chen wang)
Date: Thu, 21 Apr 2022 16:54:32 -0000
Subject: [maker-devel] blast error in maker
Message-ID: <CALutqN4CixGQzjRovQNLg4Mca4K+iLwR3oNOa+ESZAUWOHLLcg@mail.gmail.com>

Dear professor


maker is a great annotation software, when i using it, i have some strange
problems. i added in the google group and browsed many questions, but i
didnt get useful message for my question.

**By the way, i can not submit new question in google group(although i have
added the group and subscribed), so i send this email to you.**


I check the log file, i found somehow a file was removed, but then it
cannot find this file. Then the strange error happened.


-----


Removing file:
/xtdisk/xueyb_group/wangchenA/Petunia_denovo/HiFi/09.anno/04.maker/part-hp1/hp1_HiC1/hp1_HiC1_rnd1.make

r.output/hp1_HiC1_rnd1_datastore/1D/F6/HiC_1//theVoid.HiC_1/HiC_1.35.end.blastx.holdover

----



ERROR: No such file or directory at
/xtdisk/xueyb_group/wangchenA/Petunia_denovo/HiFi/09.anno/04.maker/part-hp1/hp1_Hi
C1/hp1_HiC1_rnd1.maker.output/hp1_HiC1_rnd1_datastore/1D/F6/HiC_1//theVoid.HiC_1/HiC_1.35.end.blastx.holdover


ERROR: Failed while collecting blastx reports
ERROR: Chunk failed at level:9, tier_type:3
FAILED CONTIG:HiC_1


merging blast reports...
doing blastn of ESTs
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG:HiC_1

----

any advice would be highly appreciated, i have been stopped in this strange
errors for days.

I submit my job at PBS. (one node, 20cpu, mpiexec -n 20).
max_dna_len=100000. TMP=/tmp/

i dont know why the .blastx.holdover file was removed by
maker/bin/../lib/Process/MpiChunk.pm?  the blast start or end coordinate is
removed because of uncomplete blast? so the blast report is truncated?

---
ncbi-blast-2.12.0+
RepeatMasker was installed with rmblast-2.2.28


thank u


best regards


wangchen


student in chinese academy of sciences
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From maker-devel at yandell-lab.org  Tue Apr 26 08:23:25 2022
From: maker-devel at yandell-lab.org (maker-devel at yandell-lab.org)
Date: Tue, 26 Apr 2022 14:23:25 -0000
Subject: [maker-devel] <p><a
 href="https://otr-online.ru/go/?url=%68%74%74%70%73%3a%2f%2f%6c%6f%63%61%6c%67%69%72%6c%70%6c%61%63%65%2e%6c%69%66%65%2f%3f%75%3d%32%76%74%70%64%30%64%26%6f%3d%79%77%75%67%75%75%39%26%6d%3d%31%26%6b%71%6a%35"><img
 src="http://insta-sex.com/app/img/offers/tube/chat.png"></a></p> invites
 you to visit this site!
Message-ID: <33DCFD09-1076-419C-B369-DCF8B6982DA4@jasminecorp.net>



 Hi ylj82zf1,

 <p><a href="https://otr-online.ru/go/?url=%68%74%74%70%73%3a%2f%2f%6c%6f%63%61%6c%67%69%72%6c%70%6c%61%63%65%2e%6c%69%66%65%2f%3f%75%3d%32%76%74%70%64%30%64%26%6f%3d%79%77%75%67%75%75%39%26%6d%3d%31%26%6b%71%6a%35"><img src="http://insta-sex.com/app/img/offers/tube/chat.png"></a></p> Thought that this page will be of interest to you
 and have invited you to visit the following page

 Jasmine Computers Inc.
 http://jasminecorp.net

 Jasmine Computers is a Web Hosting, Web and Graphics Designing and Software Development company. We provide Hosting Services on our Fast NT Server.





From wangchen236470 at gmail.com  Thu Apr 21 10:54:32 2022
From: wangchen236470 at gmail.com (chen wang)
Date: Thu, 21 Apr 2022 16:54:32 -0000
Subject: [maker-devel] blast error in maker
Message-ID: <CALutqN4CixGQzjRovQNLg4Mca4K+iLwR3oNOa+ESZAUWOHLLcg@mail.gmail.com>

Dear professor


maker is a great annotation software, when i using it, i have some strange
problems. i added in the google group and browsed many questions, but i
didnt get useful message for my question.

**By the way, i can not submit new question in google group(although i have
added the group and subscribed), so i send this email to you.**


I check the log file, i found somehow a file was removed, but then it
cannot find this file. Then the strange error happened.


-----


Removing file:
/xtdisk/xueyb_group/wangchenA/Petunia_denovo/HiFi/09.anno/04.maker/part-hp1/hp1_HiC1/hp1_HiC1_rnd1.make

r.output/hp1_HiC1_rnd1_datastore/1D/F6/HiC_1//theVoid.HiC_1/HiC_1.35.end.blastx.holdover

----



ERROR: No such file or directory at
/xtdisk/xueyb_group/wangchenA/Petunia_denovo/HiFi/09.anno/04.maker/part-hp1/hp1_Hi
C1/hp1_HiC1_rnd1.maker.output/hp1_HiC1_rnd1_datastore/1D/F6/HiC_1//theVoid.HiC_1/HiC_1.35.end.blastx.holdover


ERROR: Failed while collecting blastx reports
ERROR: Chunk failed at level:9, tier_type:3
FAILED CONTIG:HiC_1


merging blast reports...
doing blastn of ESTs
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG:HiC_1

----

any advice would be highly appreciated, i have been stopped in this strange
errors for days.

I submit my job at PBS. (one node, 20cpu, mpiexec -n 20).
max_dna_len=100000. TMP=/tmp/

i dont know why the .blastx.holdover file was removed by
maker/bin/../lib/Process/MpiChunk.pm?  the blast start or end coordinate is
removed because of uncomplete blast? so the blast report is truncated?

---
ncbi-blast-2.12.0+
RepeatMasker was installed with rmblast-2.2.28


thank u


best regards


wangchen


student in chinese academy of sciences
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From maker-devel at yandell-lab.org  Tue Apr 26 08:23:25 2022
From: maker-devel at yandell-lab.org (maker-devel at yandell-lab.org)
Date: Tue, 26 Apr 2022 14:23:25 -0000
Subject: [maker-devel] <p><a
 href="https://otr-online.ru/go/?url=%68%74%74%70%73%3a%2f%2f%6c%6f%63%61%6c%67%69%72%6c%70%6c%61%63%65%2e%6c%69%66%65%2f%3f%75%3d%32%76%74%70%64%30%64%26%6f%3d%79%77%75%67%75%75%39%26%6d%3d%31%26%6b%71%6a%35"><img
 src="http://insta-sex.com/app/img/offers/tube/chat.png"></a></p> invites
 you to visit this site!
Message-ID: <33DCFD09-1076-419C-B369-DCF8B6982DA4@jasminecorp.net>



 Hi ylj82zf1,

 <p><a href="https://otr-online.ru/go/?url=%68%74%74%70%73%3a%2f%2f%6c%6f%63%61%6c%67%69%72%6c%70%6c%61%63%65%2e%6c%69%66%65%2f%3f%75%3d%32%76%74%70%64%30%64%26%6f%3d%79%77%75%67%75%75%39%26%6d%3d%31%26%6b%71%6a%35"><img src="http://insta-sex.com/app/img/offers/tube/chat.png"></a></p> Thought that this page will be of interest to you
 and have invited you to visit the following page

 Jasmine Computers Inc.
 http://jasminecorp.net

 Jasmine Computers is a Web Hosting, Web and Graphics Designing and Software Development company. We provide Hosting Services on our Fast NT Server.





From wangchen236470 at gmail.com  Thu Apr 21 10:54:32 2022
From: wangchen236470 at gmail.com (chen wang)
Date: Thu, 21 Apr 2022 16:54:32 -0000
Subject: [maker-devel] blast error in maker
Message-ID: <CALutqN4CixGQzjRovQNLg4Mca4K+iLwR3oNOa+ESZAUWOHLLcg@mail.gmail.com>

Dear professor


maker is a great annotation software, when i using it, i have some strange
problems. i added in the google group and browsed many questions, but i
didnt get useful message for my question.

**By the way, i can not submit new question in google group(although i have
added the group and subscribed), so i send this email to you.**


I check the log file, i found somehow a file was removed, but then it
cannot find this file. Then the strange error happened.


-----


Removing file:
/xtdisk/xueyb_group/wangchenA/Petunia_denovo/HiFi/09.anno/04.maker/part-hp1/hp1_HiC1/hp1_HiC1_rnd1.make

r.output/hp1_HiC1_rnd1_datastore/1D/F6/HiC_1//theVoid.HiC_1/HiC_1.35.end.blastx.holdover

----



ERROR: No such file or directory at
/xtdisk/xueyb_group/wangchenA/Petunia_denovo/HiFi/09.anno/04.maker/part-hp1/hp1_Hi
C1/hp1_HiC1_rnd1.maker.output/hp1_HiC1_rnd1_datastore/1D/F6/HiC_1//theVoid.HiC_1/HiC_1.35.end.blastx.holdover


ERROR: Failed while collecting blastx reports
ERROR: Chunk failed at level:9, tier_type:3
FAILED CONTIG:HiC_1


merging blast reports...
doing blastn of ESTs
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG:HiC_1

----

any advice would be highly appreciated, i have been stopped in this strange
errors for days.

I submit my job at PBS. (one node, 20cpu, mpiexec -n 20).
max_dna_len=100000. TMP=/tmp/

i dont know why the .blastx.holdover file was removed by
maker/bin/../lib/Process/MpiChunk.pm?  the blast start or end coordinate is
removed because of uncomplete blast? so the blast report is truncated?

---
ncbi-blast-2.12.0+
RepeatMasker was installed with rmblast-2.2.28


thank u


best regards


wangchen


student in chinese academy of sciences
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