[maker-devel] ERROR: Unknown strand in GFFDB::_sort_exons!

Jingyin Yu jy526 at cornell.edu
Wed Aug 10 19:02:04 MDT 2022


Hello All,

I ran maker3 and got the error message, but did not get way how to solve it,
##############################################
ERROR: Unknown strand in GFFDB::_sort_exons!
--> rank=NA, hostname=swift
ERROR: Failed while doing repeat masking
ERROR: Chunk failed at level:0, tier_type:1
FAILED CONTIG:chr1

ERROR: Chunk failed at level:2, tier_type:0
FAILED CONTIG:chr1

examining contents of the fasta file and run log
##############################################
I am not sure if you guys can give me some suggestions. Thanks a lot.

Best,
Jingyin

PostDoc, Boyce Thompson Institute for Plant Research​
Cornell University​
Ithaca, NY 14853​
Email: jy526 at cornell.edu ​

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