From sy20213040737 at cau.edu.cn  Sun Jun 19 19:45:45 2022
From: sy20213040737 at cau.edu.cn (=?UTF-8?B?6I6r5Lic6ZGr?=)
Date: Mon, 20 Jun 2022 09:45:45 +0800 (GMT+08:00)
Subject: [maker-devel] Maker MPI problems
Message-ID: <7df3af9b.51d4.1817ec98607.Coremail.sy20213040737@cau.edu.cn>

?Hello, maker development team

Few questions when I using maker with MPI.
I had a genome file with 280k contigs to annotation. And I want to run maker with MPI to speed up. So I re-install Maker, using MPIch 3.3.2-gcc-485, and I run it use command "mpirun -np 64 maker" to run it. It ran, but there is only one process running, all the others are sleeping.
And I tried other versions of MPI, such as openmpi?but something goes wrong, and reported error.
Best wishes
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From kylekeepers at gmail.com  Tue Jun 28 12:54:05 2022
From: kylekeepers at gmail.com (Kyle Keepers)
Date: Tue, 28 Jun 2022 12:54:05 -0600
Subject: [maker-devel] Installation failing due to pg_config
Message-ID: <CAEtcH7y4+2MmU9zFwkCEO5HUNsWP9JkHFSTbdfzVPiEcTD7+ew@mail.gmail.com>

To whom it concerns,

I'm running the command ./Build installdeps. It fails because it asks for
the path to a file called pg_config, so it appears to be a dependency for
Maker, yet isn't installed by the installdeps script. Do I need to manually
install this program?

-- 
Kyle Keepers (he/his)
Brandvain/Kane Lab
Post-doctoral Fellow
University of Minnesota
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From carsonhh at gmail.com  Tue Jun 28 14:30:56 2022
From: carsonhh at gmail.com (Carson Holt)
Date: Tue, 28 Jun 2022 14:30:56 -0600
Subject: [maker-devel] Installation failing due to pg_config
In-Reply-To: <CAEtcH7y4+2MmU9zFwkCEO5HUNsWP9JkHFSTbdfzVPiEcTD7+ew@mail.gmail.com>
References: <CAEtcH7y4+2MmU9zFwkCEO5HUNsWP9JkHFSTbdfzVPiEcTD7+ew@mail.gmail.com>
Message-ID: <A502459B-1745-45D4-9751-EC841C4E68CD@gmail.com>

Say no to the optional dependencies question ?>

Checking optional dependencies:
Install DBD::Pg? [Y ]

?Carson




> On Jun 28, 2022, at 12:54 PM, Kyle Keepers <kylekeepers at gmail.com <mailto:kylekeepers at gmail.com>> wrote:
> 
> To whom it concerns,
> 
> I'm running the command ./Build installdeps. It fails because it asks for the path to a file called pg_config, so it appears to be a dependency for Maker, yet isn't installed by the installdeps script. Do I need to manually install this program?
> 
> -- 
> Kyle Keepers (he/his)
> Brandvain/Kane Lab
> Post-doctoral Fellow
> University of Minnesota
> _______________________________________________
> maker-devel mailing list
> maker-devel at yandell-lab.org <mailto:maker-devel at yandell-lab.org>
> http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org

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From sy20213040737 at cau.edu.cn  Sun Jun 19 19:45:45 2022
From: sy20213040737 at cau.edu.cn (=?UTF-8?B?6I6r5Lic6ZGr?=)
Date: Mon, 20 Jun 2022 09:45:45 +0800 (GMT+08:00)
Subject: [maker-devel] Maker MPI problems
Message-ID: <7df3af9b.51d4.1817ec98607.Coremail.sy20213040737@cau.edu.cn>

?Hello, maker development team

Few questions when I using maker with MPI.
I had a genome file with 280k contigs to annotation. And I want to run maker with MPI to speed up. So I re-install Maker, using MPIch 3.3.2-gcc-485, and I run it use command "mpirun -np 64 maker" to run it. It ran, but there is only one process running, all the others are sleeping.
And I tried other versions of MPI, such as openmpi?but something goes wrong, and reported error.
Best wishes
-------------- next part --------------
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From kylekeepers at gmail.com  Tue Jun 28 12:54:05 2022
From: kylekeepers at gmail.com (Kyle Keepers)
Date: Tue, 28 Jun 2022 12:54:05 -0600
Subject: [maker-devel] Installation failing due to pg_config
Message-ID: <CAEtcH7y4+2MmU9zFwkCEO5HUNsWP9JkHFSTbdfzVPiEcTD7+ew@mail.gmail.com>

To whom it concerns,

I'm running the command ./Build installdeps. It fails because it asks for
the path to a file called pg_config, so it appears to be a dependency for
Maker, yet isn't installed by the installdeps script. Do I need to manually
install this program?

-- 
Kyle Keepers (he/his)
Brandvain/Kane Lab
Post-doctoral Fellow
University of Minnesota
-------------- next part --------------
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From carsonhh at gmail.com  Tue Jun 28 14:30:56 2022
From: carsonhh at gmail.com (Carson Holt)
Date: Tue, 28 Jun 2022 14:30:56 -0600
Subject: [maker-devel] Installation failing due to pg_config
In-Reply-To: <CAEtcH7y4+2MmU9zFwkCEO5HUNsWP9JkHFSTbdfzVPiEcTD7+ew@mail.gmail.com>
References: <CAEtcH7y4+2MmU9zFwkCEO5HUNsWP9JkHFSTbdfzVPiEcTD7+ew@mail.gmail.com>
Message-ID: <A502459B-1745-45D4-9751-EC841C4E68CD@gmail.com>

Say no to the optional dependencies question ?>

Checking optional dependencies:
Install DBD::Pg? [Y ]

?Carson




> On Jun 28, 2022, at 12:54 PM, Kyle Keepers <kylekeepers at gmail.com <mailto:kylekeepers at gmail.com>> wrote:
> 
> To whom it concerns,
> 
> I'm running the command ./Build installdeps. It fails because it asks for the path to a file called pg_config, so it appears to be a dependency for Maker, yet isn't installed by the installdeps script. Do I need to manually install this program?
> 
> -- 
> Kyle Keepers (he/his)
> Brandvain/Kane Lab
> Post-doctoral Fellow
> University of Minnesota
> _______________________________________________
> maker-devel mailing list
> maker-devel at yandell-lab.org <mailto:maker-devel at yandell-lab.org>
> http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org

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From sy20213040737 at cau.edu.cn  Sun Jun 19 19:45:45 2022
From: sy20213040737 at cau.edu.cn (=?UTF-8?B?6I6r5Lic6ZGr?=)
Date: Mon, 20 Jun 2022 09:45:45 +0800 (GMT+08:00)
Subject: [maker-devel] Maker MPI problems
Message-ID: <7df3af9b.51d4.1817ec98607.Coremail.sy20213040737@cau.edu.cn>

?Hello, maker development team

Few questions when I using maker with MPI.
I had a genome file with 280k contigs to annotation. And I want to run maker with MPI to speed up. So I re-install Maker, using MPIch 3.3.2-gcc-485, and I run it use command "mpirun -np 64 maker" to run it. It ran, but there is only one process running, all the others are sleeping.
And I tried other versions of MPI, such as openmpi?but something goes wrong, and reported error.
Best wishes
-------------- next part --------------
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From kylekeepers at gmail.com  Tue Jun 28 12:54:05 2022
From: kylekeepers at gmail.com (Kyle Keepers)
Date: Tue, 28 Jun 2022 12:54:05 -0600
Subject: [maker-devel] Installation failing due to pg_config
Message-ID: <CAEtcH7y4+2MmU9zFwkCEO5HUNsWP9JkHFSTbdfzVPiEcTD7+ew@mail.gmail.com>

To whom it concerns,

I'm running the command ./Build installdeps. It fails because it asks for
the path to a file called pg_config, so it appears to be a dependency for
Maker, yet isn't installed by the installdeps script. Do I need to manually
install this program?

-- 
Kyle Keepers (he/his)
Brandvain/Kane Lab
Post-doctoral Fellow
University of Minnesota
-------------- next part --------------
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From carsonhh at gmail.com  Tue Jun 28 14:30:56 2022
From: carsonhh at gmail.com (Carson Holt)
Date: Tue, 28 Jun 2022 14:30:56 -0600
Subject: [maker-devel] Installation failing due to pg_config
In-Reply-To: <CAEtcH7y4+2MmU9zFwkCEO5HUNsWP9JkHFSTbdfzVPiEcTD7+ew@mail.gmail.com>
References: <CAEtcH7y4+2MmU9zFwkCEO5HUNsWP9JkHFSTbdfzVPiEcTD7+ew@mail.gmail.com>
Message-ID: <A502459B-1745-45D4-9751-EC841C4E68CD@gmail.com>

Say no to the optional dependencies question ?>

Checking optional dependencies:
Install DBD::Pg? [Y ]

?Carson




> On Jun 28, 2022, at 12:54 PM, Kyle Keepers <kylekeepers at gmail.com <mailto:kylekeepers at gmail.com>> wrote:
> 
> To whom it concerns,
> 
> I'm running the command ./Build installdeps. It fails because it asks for the path to a file called pg_config, so it appears to be a dependency for Maker, yet isn't installed by the installdeps script. Do I need to manually install this program?
> 
> -- 
> Kyle Keepers (he/his)
> Brandvain/Kane Lab
> Post-doctoral Fellow
> University of Minnesota
> _______________________________________________
> maker-devel mailing list
> maker-devel at yandell-lab.org <mailto:maker-devel at yandell-lab.org>
> http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org

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