[maker-devel] Maker always fails to run on a particular chromosome.

[Carson Holt]

You have a number of initial GFF3 related errors. I think one of your input files has an issue somewhere. Likely a truncated line in the GFF3. You will have to find and fix the feature with issues, then delete any *.db files under the *.maker.output directory before restarting. That will force it to rebuild the database that maps the current GFF3 files.

Thanks,
Carson


> On Oct 23, 2022, at 12:08 AM, WIIE AY <aywiiee at gmail.com> wrote:
> 
> Hi,
> 
> Thanks for this excellent software.
> However, when we annotated a rice genome (chr1-12) using Maker/3.01.03, the first round ran very well.
> When we added the snap and gmhmm models in the second round, only chr04 always failed in 12 chromosomes.
> Here is my chr4_run.log, stderr.out.(Maybe need maker_opts.ctl.)
> Looking forward to your reply.
>  
>  maker_opts.ctl <https://drive.google.com/file/d/1TCjAPWGbQSMA4g49wQWySzROvsCY_rRg/view?usp=drive_web>
>  run.log <https://drive.google.com/file/d/1li8Fn-AjOFfbLmcF_PFwpI6Eq-q9qeGs/view?usp=drive_web>
>  stderr_73012967.err <https://drive.google.com/file/d/1hEYAcxgyLNeuWCHOcKQbpwyCesfWDHbg/view?usp=drive_web>THANKS 
> Peter
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