[maker-devel] Augustus predictions within MAKER2

[Jason Stajich]

After you run the gff3_merge step you can
grep augustus final.gff > augustus.gff3

On Wed, Nov 23, 2022 at 8:02 AM Alam,Elissar <elissaralam at ufl.edu> wrote:

> Hello,
>
>
>
> I ran Augustus and SNAP as part of the MAKER2 gene annotation pipeline. I
> would like to use the gene predictions generated by Augustus (prior to
> MAKER selecting the final gene model based on all ab initio predictions)
> for downstream analyses. Is there a way to obtain the Augustus gene
> predictions in gff3 format from MAKER2?
>
>
>
> Thanks a million,
>
> Elissar
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>
-- 
Jason Stajich
jason.stajich at gmail.com
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