From carson.holt at genetics.utah.edu  Wed Sep 13 09:15:39 2023
From: carson.holt at genetics.utah.edu (Carson Hinton Holt)
Date: Wed, 13 Sep 2023 15:15:39 +0000
Subject: [maker-devel] MAKER Commercial User -- Install and run issues
In-Reply-To: <CAGkx0YPErowGLfEkMDf-dkt-66HheciEqTE7n3BbTaKeL9g6iA@mail.gmail.com>
References: <CAGkx0YNmZe8ZAu9uD_vqyuxDUhNAA-hxTa2sei4jJUZLt-1nMg@mail.gmail.com>
 <6692AA58-9051-4012-96DE-56F5D679CD8F@gmail.com>
 <CAGkx0YMaKMGxtZOSfCidC3yhiycmdcAZykcD3JwXVn1-TrGfVA@mail.gmail.com>
 <D9DEC68B-9377-419B-A1B9-52DEAE865178@gmail.com>
 <CAGkx0YMWcp=v6qPJcYAFh-zRUSk4vXCqakQz2QXqHNQCfs8Nxw@mail.gmail.com>
 <7070D186-7E18-4DBC-BABD-3D6170EB4A70@gmail.com>
 <CAGkx0YOvJYpXHdFfX=OKOHp851fqGXMyYmRLYM1=fcZp36_Q6g@mail.gmail.com>
 <B81D93F9-FC9C-4F40-9739-5533B7F3E149@gmail.com>
 <CAGkx0YPErowGLfEkMDf-dkt-66HheciEqTE7n3BbTaKeL9g6iA@mail.gmail.com>
Message-ID: <9FF1AEEE-FA74-4821-8BC5-71E067EF5A7B@genetics.utah.edu>

The seg fault is being thrown by MPI itself. That is why MAKER can run on its own.

There are several things you can check (or just do them all as a sort of nuclear option):
*First make sure you are not using conda or miniconda environments. This can create subtle conflicts between executables and libraries as condo/minicanda will try to override some paths.
*Next you may need to install OpenMPI or MPICH yourself (i.e. don?t use apt-get or other package install managers). https://www.mpich.org/downloads/.
*Lastly you can also install your own perl and override the system perl. Depends on your system configuration, i.e. if using CentOS 7, your perl is very out of date with other libraries that may have been updated on the system.

After compiling everything and installing, you will want to reinstall MAKER (the new MPI install must recompile it?s bindings to the application bering run).


Here is a step by step (comments marked with ?#'):
#create a directory to prep install
mkdir $HOME/install_prep

#install MPICH
cd $HOME/install_prep
wget https://www.mpich.org/static/downloads/4.1.2/mpich-4.1.2.tar.gz
tar -zxvf mpich-4.1.2.tar.gz
cd mpich-4.1.2/
./configure --prefix=$HOME/opt/mpich
make
make install
echo 'export PATH=$HOME/opt/mpich/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#install a new Perl
cd $HOME/install_prep
wget https://www.cpan.org/src/5.0/perl-5.38.0.tar.gz --no-check-certificate
tar -zxvf perl-5.38.0.tar.gz
cd perl-5.38.0
./Configure -d -Dprefix=$HOME/opt/perl5
make
make install
echo 'export PATH=$HOME/opt/perl5/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#install MAKER with MPI support
cd $HOME/opt
wget http://weatherby.genetics.utah.edu/maker_downloads/AD6E/A1B0/C2B7/558563CFD35E343BA1B888148294/maker-3.01.04.tgz
tar -zxvf maker-3.01.04.tgz
rm -rf maker-3.01.04.tgz
cd maker/src
perl Build.PL ##say yes to MPI question
./Build installdeps ##just hit 'enter' to accept any defaults
### if you get errors mentioning '--no-check-certificate', run the command 'cpan' in your terminal.
### If it asks to set up everything automatically, say 'yes'.
### Next, whil einside cpan, run the command 'o conf init pushy_https'.
### Say 'no' to the question it asks, and then run 'o conf commit' to save changes and 'q' to exit.
### Then retry the './Build installdeps' command
./Build installexes
./Build install
echo 'export PATH=$HOME/opt/maker/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#test MAKER
cd $HOME/install_prep
mpiexec -n 10 maker --help ##should print a single help message
cp -R $HOME/opt/maker/data ./test
cd test
maker -CTL
mpiexec -n 10 maker --protein dpp_protein.fasta --genome dpp_contig.fasta --est dpp_est.fasta ##should run MAKER under MPI



?Carson


On Sep 12, 2023, at 2:22 PM, Hayley Mangelson <hayley at phasegenomics.com> wrote:

Hi Carson,

I have tried installing MPICH and OpenMPI various ways now and am still having issues. MAKER appears to be running when I am not using MPI, but I am attaching the maker output (with -debug flag) and here is the error I get when trying to multithread.

===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   PID 35952 RUNNING AT ip-172-31-12-194
=   EXIT CODE: 9
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions

On Thu, Aug 24, 2023 at 6:26?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Once you install MPICH or OpenMPI you must launch MAKER through mpiexec and speciffy the CPU count to MPI. On a single instance you just give the CPU count off that instance, but you can also go across instances using Amazon?s Parallel Cluster.

Here is an example ?> https://efish.integrativebiology.msu.edu/2015/02/10/annotate.html
That example uses StarCluster which is now deprecated, but the MPI install and MAKER run still apply.

Here is another example of using MPi ?> https://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_WGS_Assembly_and_Annotation_Winter_School_2018#MPI_Support

Note that for OpenMPI you have to set the LD_PRELOAD environmental variable before launch.
export LD_PRELOAD=/usr/lib64/openmpi-1.10/lib/libmpi.so

?Carson


On Aug 18, 2023, at 2:53 PM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

I am working on an AWS EC2 instance that runs Amazon Linux, and I have tried a couple of installs (MPICH and Open MPI), neither of which worked. I don't have any installed on my current instance.

On Tue, Aug 15, 2023 at 5:08?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Do you already have MPI installed on your system, and if so which MPI and what version (i.e. MPICH, MVAPICH2, Intel MPI, Open MPI, etc)?

?Carson


On Aug 15, 2023, at 9:34 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

Hi Carson,

Excellent, thanks so much! I have that part working. The multithreading is still eluding me. Do you have a recommended method of installing a compatible version of MPI?

Thanks,

Hayley

On Fri, Aug 11, 2023 at 4:04?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
The error is coming from Augustus. There is a problem with the species file you selected. Or you put it in the wrong place.

This is the error ?>
Could not find the config file /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/BUSCO_evans_trout_hap1/BUSCO_evans_trout_hap1_parameters.cfg

The species info must exist under this base directory by default (it?s where you let MAKER install Augustus) ?>  /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/

You can also place the species files somewhere else but you need to set the AUGUSTUS_CONFIG_PATH so Augustus knows where to look.

Example (in your ~/.bash_profile):
export AUGUSTUS_CONFIG_PATH=$HOME/muy_augustus_species

Thanks,
Carson



On Aug 11, 2023, at 7:20 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

Hi Carson,

Sure thing! Sorry for the delay, I was on vacation. I reran with just a single scaffold. Here is the STDERR.

On Mon, Jul 31, 2023 at 12:06?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Can you send me the STDERR from the maker run? If you don?t have it, run maker again with the output from the screen redirected to a file. Example ?> maker &> all_output.txt

--Carson

Sent from my iPhone

On Jul 31, 2023, at 10:04 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

?
Hi!

I am trying to get a fresh install of MAKER to work for me and am having a few issues.

1. I got MAKER installed (I thought) and now the log is saying all contigs failed. See attached log.
2. Having tried several versions and methods of installation, I cannot get multithreading to work.

Could you help me work through these issues?
Thanks,

Hayley
--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<PGA_assembly_hap1_master_datastore_index.log>
_______________________________________________
maker-devel mailing list
maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>
http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org


--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<all_output.txt>



--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>




--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>




--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<all_output.txt>

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From hayley at phasegenomics.com  Tue Sep 12 14:22:36 2023
From: hayley at phasegenomics.com (Hayley Mangelson)
Date: Tue, 12 Sep 2023 16:22:36 -0400
Subject: [maker-devel] MAKER Commercial User -- Install and run issues
In-Reply-To: <B81D93F9-FC9C-4F40-9739-5533B7F3E149@gmail.com>
References: <CAGkx0YNmZe8ZAu9uD_vqyuxDUhNAA-hxTa2sei4jJUZLt-1nMg@mail.gmail.com>
 <6692AA58-9051-4012-96DE-56F5D679CD8F@gmail.com>
 <CAGkx0YMaKMGxtZOSfCidC3yhiycmdcAZykcD3JwXVn1-TrGfVA@mail.gmail.com>
 <D9DEC68B-9377-419B-A1B9-52DEAE865178@gmail.com>
 <CAGkx0YMWcp=v6qPJcYAFh-zRUSk4vXCqakQz2QXqHNQCfs8Nxw@mail.gmail.com>
 <7070D186-7E18-4DBC-BABD-3D6170EB4A70@gmail.com>
 <CAGkx0YOvJYpXHdFfX=OKOHp851fqGXMyYmRLYM1=fcZp36_Q6g@mail.gmail.com>
 <B81D93F9-FC9C-4F40-9739-5533B7F3E149@gmail.com>
Message-ID: <CAGkx0YPErowGLfEkMDf-dkt-66HheciEqTE7n3BbTaKeL9g6iA@mail.gmail.com>

Hi Carson,

I have tried installing MPICH and OpenMPI various ways now and am still
having issues. MAKER appears to be running when I am not using MPI, but I
am attaching the maker output (with -debug flag) and here is the error I
get when trying to multithread.

===================================================================================

=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES

=   PID 35952 RUNNING AT ip-172-31-12-194

=   EXIT CODE: 9

=   CLEANING UP REMAINING PROCESSES

=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES

===================================================================================

YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault
(signal 11)

This typically refers to a problem with your application.

Please see the FAQ page for debugging suggestions

On Thu, Aug 24, 2023 at 6:26?PM Carson Holt <carsonhh at gmail.com> wrote:

> Once you install MPICH or OpenMPI you must launch MAKER through mpiexec
> and speciffy the CPU count to MPI. On a single instance you just give the
> CPU count off that instance, but you can also go across instances using
> Amazon?s Parallel Cluster.
>
> Here is an example ?>
> https://efish.integrativebiology.msu.edu/2015/02/10/annotate.html
> That example uses StarCluster which is now deprecated, but the MPI install
> and MAKER run still apply.
>
> Here is another example of using MPi ?>
> https://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_WGS_Assembly_and_Annotation_Winter_School_2018#MPI_Support
>
> Note that for OpenMPI you have to set the LD_PRELOAD environmental
> variable before launch.
> export LD_PRELOAD=/usr/lib64/openmpi-1.10/lib/libmpi.so
>
> ?Carson
>
>
> On Aug 18, 2023, at 2:53 PM, Hayley Mangelson <hayley at phasegenomics.com>
> wrote:
>
> I am working on an AWS EC2 instance that runs Amazon Linux, and I have
> tried a couple of installs (MPICH and Open MPI), neither of which worked. I
> don't have any installed on my current instance.
>
> On Tue, Aug 15, 2023 at 5:08?PM Carson Holt <carsonhh at gmail.com> wrote:
>
>> Do you already have MPI installed on your system, and if so which MPI and
>> what version (i.e. MPICH, MVAPICH2, Intel MPI, Open MPI, etc)?
>>
>> ?Carson
>>
>>
>> On Aug 15, 2023, at 9:34 AM, Hayley Mangelson <hayley at phasegenomics.com>
>> wrote:
>>
>> Hi Carson,
>>
>> Excellent, thanks so much! I have that part working. The multithreading
>> is still eluding me. Do you have a recommended method of installing a
>> compatible version of MPI?
>>
>> Thanks,
>>
>> Hayley
>>
>> On Fri, Aug 11, 2023 at 4:04?PM Carson Holt <carsonhh at gmail.com> wrote:
>>
>>> The error is coming from Augustus. There is a problem with the species
>>> file you selected. Or you put it in the wrong place.
>>>
>>> This is the error ?>
>>> Could not find the config file
>>> /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/BUSCO_evans_trout_hap1/BUSCO_evans_trout_hap1_parameters.cfg
>>>
>>> The species info must exist under this base directory by default (it?s
>>> where you let MAKER install Augustus) ?>
>>>  /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/
>>>
>>> You can also place the species files somewhere else but you need to set
>>> the AUGUSTUS_CONFIG_PATH so Augustus knows where to look.
>>>
>>> Example (in your ~/.bash_profile):
>>> export AUGUSTUS_CONFIG_PATH=$HOME/muy_augustus_species
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>> On Aug 11, 2023, at 7:20 AM, Hayley Mangelson <hayley at phasegenomics.com>
>>> wrote:
>>>
>>> Hi Carson,
>>>
>>> Sure thing! Sorry for the delay, I was on vacation. I reran with just a
>>> single scaffold. Here is the STDERR.
>>>
>>> On Mon, Jul 31, 2023 at 12:06?PM Carson Holt <carsonhh at gmail.com> wrote:
>>>
>>>> Can you send me the STDERR from the maker run? If you don?t have it,
>>>> run maker again with the output from the screen redirected to a file.
>>>> Example ?> maker &> all_output.txt
>>>>
>>>> --Carson
>>>>
>>>> Sent from my iPhone
>>>>
>>>> On Jul 31, 2023, at 10:04 AM, Hayley Mangelson <
>>>> hayley at phasegenomics.com> wrote:
>>>>
>>>> ?
>>>> Hi!
>>>>
>>>> I am trying to get a fresh install of MAKER to work for me and am
>>>> having a few issues.
>>>>
>>>> 1. I got MAKER installed (I thought) and now the log is saying all
>>>> contigs failed. See attached log.
>>>> 2. Having tried several versions and methods of installation, I cannot
>>>> get multithreading to work.
>>>>
>>>> Could you help me work through these issues?
>>>> Thanks,
>>>>
>>>> Hayley
>>>> --
>>>> Hayley Mangelson
>>>> Senior Bioinformatics Lead
>>>> Phase Genomics, Inc
>>>> www.phasegenomics.com
>>>>
>>>> <PGA_assembly_hap1_master_datastore_index.log>
>>>> _______________________________________________
>>>> maker-devel mailing list
>>>> maker-devel at yandell-lab.org
>>>> http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org
>>>>
>>>>
>>>
>>> --
>>> Hayley Mangelson
>>> Senior Bioinformatics Lead
>>> Phase Genomics, Inc
>>> www.phasegenomics.com
>>>
>>> <all_output.txt>
>>>
>>>
>>>
>>
>> --
>> Hayley Mangelson
>> Senior Bioinformatics Lead
>> Phase Genomics, Inc
>> www.phasegenomics.com
>>
>>
>>
>
> --
> Hayley Mangelson
> Senior Bioinformatics Lead
> Phase Genomics, Inc
> www.phasegenomics.com
>
>
>

-- 
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com
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	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::Annotation::SimpleValue	/usr/local/share/perl5/Bio/Annotation/SimpleValue.pm
	1.7.8	Bio::Annotation::TypeManager	/usr/local/share/perl5/Bio/Annotation/TypeManager.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::AnalysisParserI	/usr/local/share/perl5/Bio/AnalysisParserI.pm
	1.7.8	Bio::AnnotatableI	/usr/local/share/perl5/Bio/AnnotatableI.pm
	1.7.8	Bio::Annotation::Collection	/usr/local/share/perl5/Bio/Annotation/Collection.pm
	1.7.8	Bio::Annotation::SimpleValue	/usr/local/share/perl5/Bio/Annotation/SimpleValue.pm
	1.7.8	Bio::Annotation::TypeManager	/usr/local/share/perl5/Bio/Annotation/TypeManager.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::Annotation::Collection	/usr/local/share/perl5/Bio/Annotation/Collection.pm
	1.7.8	Bio::Annotation::SimpleValue	/usr/local/share/perl5/Bio/Annotation/SimpleValue.pm
	1.7.8	Bio::Annotation::TypeManager	/usr/local/share/perl5/Bio/Annotation/TypeManager.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::AnnotatableI	/usr/local/share/perl5/Bio/AnnotatableI.pm
	1.7.8	Bio::Annotation::Collection	/usr/local/share/perl5/Bio/Annotation/Collection.pm
	1.7.8	Bio::Annotation::SimpleValue	/usr/local/share/perl5/Bio/Annotation/SimpleValue.pm
	1.7.8	Bio::Annotation::SimpleValue	/usr/local/share/perl5/Bio/Annotation/SimpleValue.pm
	1.7.8	Bio::Annotation::TypeManager	/usr/local/share/perl5/Bio/Annotation/TypeManager.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::Annotation::TypeManager	/usr/local/share/perl5/Bio/Annotation/TypeManager.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::Annotation::TypeManager	/usr/local/share/perl5/Bio/Annotation/TypeManager.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::Annotation::TypeManager	/usr/local/share/perl5/Bio/Annotation/TypeManager.pm
	1.7.8	Bio::AnnotationCollectionI	/usr/local/share/perl5/Bio/AnnotationCollectionI.pm
	1.7.8	Bio::AnnotationI	/usr/local/share/perl5/Bio/AnnotationI.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::DB::Fasta	/usr/local/share/perl5/Bio/DB/Fasta.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::DB::InMemoryCache	/usr/local/share/perl5/Bio/DB/InMemoryCache.pm
	1.7.8	Bio::DB::IndexedBase	/usr/local/share/perl5/Bio/DB/IndexedBase.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
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	0.01	CGL::Annotation::FeatureLocation	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Revcomp.pm
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	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.40	Cwd	/usr/lib64/perl5/vendor_perl/Cwd.pm
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	0.01	CGL::Annotation::Feature::Gene	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Iterator.pm
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	0.01	CGL::Clone	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/home/ec2-user/PGTools/maker/bin/../lib/CGL/TranslationMachine.pm
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	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.46	Clone	/home/ec2-user/PGTools/maker/bin/../perl/lib/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.40	Cwd	/usr/lib64/perl5/vendor_perl/Cwd.pm
	1.72	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
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	2.145	Data::Dumper	/usr/lib64/perl5/vendor_perl/Data/Dumper.pm
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	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
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	0.11	Datastore::Base	/home/ec2-user/PGTools/maker/bin/../lib/Datastore/Base.pm
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	0.11	Datastore::Base	/home/ec2-user/PGTools/maker/bin/../lib/Datastore/Base.pm
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	0.11	Datastore::Base	/home/ec2-user/PGTools/maker/bin/../lib/Datastore/Base.pm
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	0.11	Datastore::Base	/home/ec2-user/PGTools/maker/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/home/ec2-user/PGTools/maker/bin/../lib/Datastore/MD5.pm
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	0.01	Datastore::MD5	/home/ec2-user/PGTools/maker/bin/../lib/Datastore/MD5.pm
	0.01	Datastore::MD5	/home/ec2-user/PGTools/maker/bin/../lib/Datastore/MD5.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	2.52	Digest::MD5	/usr/lib64/perl5/vendor_perl/Digest/MD5.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	2.52	Digest::MD5	/usr/lib64/perl5/vendor_perl/Digest/MD5.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	0.01	Datastore::MD5	/home/ec2-user/PGTools/maker/bin/../lib/Datastore/MD5.pm
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	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	3.40	Cwd	/usr/lib64/perl5/vendor_perl/Cwd.pm
	1.16	Digest::base	/usr/share/perl5/vendor_perl/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
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	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
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	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
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	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
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	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
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	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
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	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
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	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
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	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
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	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
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	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
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	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
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	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
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	1.16	Digest::base	/usr/share/perl5/vendor_perl/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
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	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
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	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
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	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
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	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
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	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
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	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
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	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
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	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
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	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
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	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
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	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
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	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
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	1.18	overload	/usr/share/perl5/overload.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm










	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm


	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm


STATUS: Parsing control files...
Calling GI::load_control_files at /home/ec2-user/PGTools/maker/bin/maker line 452.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 463.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 465.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 483.
STATUS: Processing and indexing input FASTA files...
Calling GI::s_abs_path at /home/ec2-user/PGTools/maker/bin/maker line 519.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::s_abs_path at /home/ec2-user/PGTools/maker/bin/maker line 519.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::s_abs_path at /home/ec2-user/PGTools/maker/bin/maker line 519.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::s_abs_path at /home/ec2-user/PGTools/maker/bin/maker line 519.
Calling GI::s_abs_path at /home/ec2-user/PGTools/maker/bin/maker line 519.
Calling List::Util::shuffle at /home/ec2-user/PGTools/maker/bin/maker line 529.
Calling GI::split_db at /home/ec2-user/PGTools/maker/bin/maker line 610.
Calling GI::split_db at /home/ec2-user/PGTools/maker/bin/maker line 610.
Calling GI::split_db at /home/ec2-user/PGTools/maker/bin/maker line 610.
Calling GI::split_db at /home/ec2-user/PGTools/maker/bin/maker line 610.
Calling GI::split_db at /home/ec2-user/PGTools/maker/bin/maker line 610.
Calling File::Path::rmtree at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling File::Path::rmtree at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling File::Path::rmtree at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling File::Path::rmtree at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling File::Path::rmtree at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextDef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextDef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextDef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextDef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextDef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling mkdir at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextFastaRef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling mkdir at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextFastaRef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling mkdir at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling mkdir at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextFastaRef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextFastaRef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling mkdir at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextFastaRef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling system at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling system at /home/ec2-user/PGTools/maker/bin/maker line 611.

===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   PID 36959 RUNNING AT ip-172-31-12-194
=   EXIT CODE: 9
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions

From hayley at phasegenomics.com  Tue Sep 26 08:22:28 2023
From: hayley at phasegenomics.com (Hayley Mangelson)
Date: Tue, 26 Sep 2023 10:22:28 -0400
Subject: [maker-devel] MAKER Commercial User -- Install and run issues
In-Reply-To: <9FF1AEEE-FA74-4821-8BC5-71E067EF5A7B@genetics.utah.edu>
References: <CAGkx0YNmZe8ZAu9uD_vqyuxDUhNAA-hxTa2sei4jJUZLt-1nMg@mail.gmail.com>
 <6692AA58-9051-4012-96DE-56F5D679CD8F@gmail.com>
 <CAGkx0YMaKMGxtZOSfCidC3yhiycmdcAZykcD3JwXVn1-TrGfVA@mail.gmail.com>
 <D9DEC68B-9377-419B-A1B9-52DEAE865178@gmail.com>
 <CAGkx0YMWcp=v6qPJcYAFh-zRUSk4vXCqakQz2QXqHNQCfs8Nxw@mail.gmail.com>
 <7070D186-7E18-4DBC-BABD-3D6170EB4A70@gmail.com>
 <CAGkx0YOvJYpXHdFfX=OKOHp851fqGXMyYmRLYM1=fcZp36_Q6g@mail.gmail.com>
 <B81D93F9-FC9C-4F40-9739-5533B7F3E149@gmail.com>
 <CAGkx0YPErowGLfEkMDf-dkt-66HheciEqTE7n3BbTaKeL9g6iA@mail.gmail.com>
 <9FF1AEEE-FA74-4821-8BC5-71E067EF5A7B@genetics.utah.edu>
Message-ID: <CAGkx0YM9PXCGP0MXvsA3Anva3Kdz+wX94kN+YBKk-eHg0n1uYw@mail.gmail.com>

Hi Carson,

Thought I should report back that this worked! Now I am just dealing with
4/32 of my contigs failing. It looks like they are failing on the repeat
masking step. I am a bit confused as to why just a handful would fail here.
Any suggestions on how to overcome this (hopefully final) obstacle?

Thanks,

Hayley

On Wed, Sep 13, 2023 at 11:20?AM Carson Hinton Holt <
carson.holt at genetics.utah.edu> wrote:

> The seg fault is being thrown by MPI itself. That is why MAKER can run on
> its own.
>
> There are several things you can check (or just do them all as a sort of
> nuclear option):
> *First make sure you are not using conda or miniconda environments. This
> can create subtle conflicts between executables and libraries as
> condo/minicanda will try to override some paths.
> *Next you may need to install OpenMPI or MPICH yourself (i.e. don?t use
> apt-get or other package install managers).
> https://www.mpich.org/downloads/.
> *Lastly you can also install your own perl and override the system perl.
> Depends on your system configuration, i.e. if using CentOS 7, your perl is
> very out of date with other libraries that may have been updated on the
> system.
>
> After compiling everything and installing, you will want to reinstall
> MAKER (the new MPI install must recompile it?s bindings to the application
> bering run).
>
>
> Here is a step by step (comments marked with ?#'):
> #create a directory to prep install
> mkdir $HOME/install_prep
>
> #install MPICH
> cd $HOME/install_prep
> wget https://www.mpich.org/static/downloads/4.1.2/mpich-4.1.2.tar.gz
> tar -zxvf mpich-4.1.2.tar.gz
> cd mpich-4.1.2/
> ./configure --prefix=$HOME/opt/mpich
> make
> make install
> echo 'export PATH=$HOME/opt/mpich/bin:$PATH' >> ~/.bash_profile
> source ~/.bash_profile
>
> #install a new Perl
> cd $HOME/install_prep
> wget https://www.cpan.org/src/5.0/perl-5.38.0.tar.gz
> --no-check-certificate
> tar -zxvf perl-5.38.0.tar.gz
> cd perl-5.38.0
> ./Configure -d -Dprefix=$HOME/opt/perl5
> make
> make install
> echo 'export PATH=$HOME/opt/perl5/bin:$PATH' >> ~/.bash_profile
> source ~/.bash_profile
>
> #install MAKER with MPI support
> cd $HOME/opt
> wget
> http://weatherby.genetics.utah.edu/maker_downloads/AD6E/A1B0/C2B7/558563CFD35E343BA1B888148294/maker-3.01.04.tgz
> tar -zxvf maker-3.01.04.tgz
> rm -rf maker-3.01.04.tgz
> cd maker/src
> perl Build.PL ##say yes to MPI question
> ./Build installdeps ##just hit 'enter' to accept any defaults
> ### if you get errors mentioning '--no-check-certificate', run the command
> 'cpan' in your terminal.
> ### If it asks to set up everything automatically, say 'yes'.
> ### Next, whil einside cpan, run the command 'o conf init pushy_https'.
> ### Say 'no' to the question it asks, and then run 'o conf commit' to save
> changes and 'q' to exit.
> ### Then retry the './Build installdeps' command
> ./Build installexes
> ./Build install
> echo 'export PATH=$HOME/opt/maker/bin:$PATH' >> ~/.bash_profile
> source ~/.bash_profile
>
> #test MAKER
> cd $HOME/install_prep
> mpiexec -n 10 maker --help ##should print a single help message
> cp -R $HOME/opt/maker/data ./test
> cd test
> maker -CTL
> mpiexec -n 10 maker --protein dpp_protein.fasta --genome dpp_contig.fasta
> --est dpp_est.fasta ##should run MAKER under MPI
>
>
>
> ?Carson
>
>
> On Sep 12, 2023, at 2:22 PM, Hayley Mangelson <hayley at phasegenomics.com>
> wrote:
>
> Hi Carson,
>
> I have tried installing MPICH and OpenMPI various ways now and am still
> having issues. MAKER appears to be running when I am not using MPI, but I
> am attaching the maker output (with -debug flag) and here is the error I
> get when trying to multithread.
>
>
> ===================================================================================
> =   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> =   PID 35952 RUNNING AT ip-172-31-12-194
> =   EXIT CODE: 9
> =   CLEANING UP REMAINING PROCESSES
> =   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
>
> ===================================================================================
> YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault
> (signal 11)
> This typically refers to a problem with your application.
> Please see the FAQ page for debugging suggestions
>
> On Thu, Aug 24, 2023 at 6:26?PM Carson Holt <carsonhh at gmail.com> wrote:
>
>> Once you install MPICH or OpenMPI you must launch MAKER through mpiexec
>> and speciffy the CPU count to MPI. On a single instance you just give the
>> CPU count off that instance, but you can also go across instances using
>> Amazon?s Parallel Cluster.
>>
>> Here is an example ?>
>> https://efish.integrativebiology.msu.edu/2015/02/10/annotate.html
>> That example uses StarCluster which is now deprecated, but the MPI
>> install and MAKER run still apply.
>>
>> Here is another example of using MPi ?>
>> https://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_WGS_Assembly_and_Annotation_Winter_School_2018#MPI_Support
>>
>> Note that for OpenMPI you have to set the LD_PRELOAD environmental
>> variable before launch.
>> export LD_PRELOAD=/usr/lib64/openmpi-1.10/lib/libmpi.so
>>
>> ?Carson
>>
>>
>> On Aug 18, 2023, at 2:53 PM, Hayley Mangelson <hayley at phasegenomics.com>
>> wrote:
>>
>> I am working on an AWS EC2 instance that runs Amazon Linux, and I have
>> tried a couple of installs (MPICH and Open MPI), neither of which worked. I
>> don't have any installed on my current instance.
>>
>> On Tue, Aug 15, 2023 at 5:08?PM Carson Holt <carsonhh at gmail.com> wrote:
>>
>>> Do you already have MPI installed on your system, and if so which MPI
>>> and what version (i.e. MPICH, MVAPICH2, Intel MPI, Open MPI, etc)?
>>>
>>> ?Carson
>>>
>>>
>>> On Aug 15, 2023, at 9:34 AM, Hayley Mangelson <hayley at phasegenomics.com>
>>> wrote:
>>>
>>> Hi Carson,
>>>
>>> Excellent, thanks so much! I have that part working. The multithreading
>>> is still eluding me. Do you have a recommended method of installing a
>>> compatible version of MPI?
>>>
>>> Thanks,
>>>
>>> Hayley
>>>
>>> On Fri, Aug 11, 2023 at 4:04?PM Carson Holt <carsonhh at gmail.com> wrote:
>>>
>>>> The error is coming from Augustus. There is a problem with the species
>>>> file you selected. Or you put it in the wrong place.
>>>>
>>>> This is the error ?>
>>>> Could not find the config file
>>>> /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/BUSCO_evans_trout_hap1/BUSCO_evans_trout_hap1_parameters.cfg
>>>>
>>>> The species info must exist under this base directory by default (it?s
>>>> where you let MAKER install Augustus) ?>
>>>>  /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/
>>>>
>>>> You can also place the species files somewhere else but you need to set
>>>> the AUGUSTUS_CONFIG_PATH so Augustus knows where to look.
>>>>
>>>> Example (in your ~/.bash_profile):
>>>> export AUGUSTUS_CONFIG_PATH=$HOME/muy_augustus_species
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>> On Aug 11, 2023, at 7:20 AM, Hayley Mangelson <hayley at phasegenomics.com>
>>>> wrote:
>>>>
>>>> Hi Carson,
>>>>
>>>> Sure thing! Sorry for the delay, I was on vacation. I reran with just a
>>>> single scaffold. Here is the STDERR.
>>>>
>>>> On Mon, Jul 31, 2023 at 12:06?PM Carson Holt <carsonhh at gmail.com>
>>>> wrote:
>>>>
>>>>> Can you send me the STDERR from the maker run? If you don?t have it,
>>>>> run maker again with the output from the screen redirected to a file.
>>>>> Example ?> maker &> all_output.txt
>>>>>
>>>>> --Carson
>>>>>
>>>>> Sent from my iPhone
>>>>>
>>>>> On Jul 31, 2023, at 10:04 AM, Hayley Mangelson <
>>>>> hayley at phasegenomics.com> wrote:
>>>>>
>>>>> ?
>>>>> Hi!
>>>>>
>>>>> I am trying to get a fresh install of MAKER to work for me and am
>>>>> having a few issues.
>>>>>
>>>>> 1. I got MAKER installed (I thought) and now the log is saying all
>>>>> contigs failed. See attached log.
>>>>> 2. Having tried several versions and methods of installation, I cannot
>>>>> get multithreading to work.
>>>>>
>>>>> Could you help me work through these issues?
>>>>> Thanks,
>>>>>
>>>>> Hayley
>>>>> --
>>>>> Hayley Mangelson
>>>>> Senior Bioinformatics Lead
>>>>> Phase Genomics, Inc
>>>>> www.phasegenomics.com
>>>>>
>>>>> <PGA_assembly_hap1_master_datastore_index.log>
>>>>> _______________________________________________
>>>>> maker-devel mailing list
>>>>> maker-devel at yandell-lab.org
>>>>> http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org
>>>>>
>>>>>
>>>>
>>>> --
>>>> Hayley Mangelson
>>>> Senior Bioinformatics Lead
>>>> Phase Genomics, Inc
>>>> www.phasegenomics.com
>>>>
>>>> <all_output.txt>
>>>>
>>>>
>>>>
>>>
>>> --
>>> Hayley Mangelson
>>> Senior Bioinformatics Lead
>>> Phase Genomics, Inc
>>> www.phasegenomics.com
>>>
>>>
>>>
>>
>> --
>> Hayley Mangelson
>> Senior Bioinformatics Lead
>> Phase Genomics, Inc
>> www.phasegenomics.com
>>
>>
>>
>
> --
> Hayley Mangelson
> Senior Bioinformatics Lead
> Phase Genomics, Inc
> www.phasegenomics.com
>
> <all_output.txt>
>
>
>

-- 
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com
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From carson.holt at genetics.utah.edu  Tue Sep 26 12:04:53 2023
From: carson.holt at genetics.utah.edu (Carson Hinton Holt)
Date: Tue, 26 Sep 2023 18:04:53 +0000
Subject: [maker-devel] MAKER Commercial User -- Install and run issues
In-Reply-To: <CAGkx0YM9PXCGP0MXvsA3Anva3Kdz+wX94kN+YBKk-eHg0n1uYw@mail.gmail.com>
References: <CAGkx0YNmZe8ZAu9uD_vqyuxDUhNAA-hxTa2sei4jJUZLt-1nMg@mail.gmail.com>
 <6692AA58-9051-4012-96DE-56F5D679CD8F@gmail.com>
 <CAGkx0YMaKMGxtZOSfCidC3yhiycmdcAZykcD3JwXVn1-TrGfVA@mail.gmail.com>
 <D9DEC68B-9377-419B-A1B9-52DEAE865178@gmail.com>
 <CAGkx0YMWcp=v6qPJcYAFh-zRUSk4vXCqakQz2QXqHNQCfs8Nxw@mail.gmail.com>
 <7070D186-7E18-4DBC-BABD-3D6170EB4A70@gmail.com>
 <CAGkx0YOvJYpXHdFfX=OKOHp851fqGXMyYmRLYM1=fcZp36_Q6g@mail.gmail.com>
 <B81D93F9-FC9C-4F40-9739-5533B7F3E149@gmail.com>
 <CAGkx0YPErowGLfEkMDf-dkt-66HheciEqTE7n3BbTaKeL9g6iA@mail.gmail.com>
 <9FF1AEEE-FA74-4821-8BC5-71E067EF5A7B@genetics.utah.edu>
 <CAGkx0YM9PXCGP0MXvsA3Anva3Kdz+wX94kN+YBKk-eHg0n1uYw@mail.gmail.com>
Message-ID: <0EECCFD7-346C-4F53-B726-2E7779AEEAD5@genetics.utah.edu>

What does the error say? One thing you can do is run on a single thread (i.e. no mpiexec, just call maker directly - increase try count before doing this). That will run up to where the error happens, and the last thing it prints out before the error is the Repeatmasker command line used. You can then cut and paste that command to test it outside of MAKER.

?Carson

On Sep 26, 2023, at 8:22 AM, Hayley Mangelson <hayley at phasegenomics.com> wrote:

Hi Carson,

Thought I should report back that this worked! Now I am just dealing with 4/32 of my contigs failing. It looks like they are failing on the repeat masking step. I am a bit confused as to why just a handful would fail here. Any suggestions on how to overcome this (hopefully final) obstacle?

Thanks,

Hayley

On Wed, Sep 13, 2023 at 11:20?AM Carson Hinton Holt <carson.holt at genetics.utah.edu<mailto:carson.holt at genetics.utah.edu>> wrote:
The seg fault is being thrown by MPI itself. That is why MAKER can run on its own.

There are several things you can check (or just do them all as a sort of nuclear option):
*First make sure you are not using conda or miniconda environments. This can create subtle conflicts between executables and libraries as condo/minicanda will try to override some paths.
*Next you may need to install OpenMPI or MPICH yourself (i.e. don?t use apt-get or other package install managers). https://www.mpich.org/downloads/.
*Lastly you can also install your own perl and override the system perl. Depends on your system configuration, i.e. if using CentOS 7, your perl is very out of date with other libraries that may have been updated on the system.

After compiling everything and installing, you will want to reinstall MAKER (the new MPI install must recompile it?s bindings to the application bering run).


Here is a step by step (comments marked with ?#'):
#create a directory to prep install
mkdir $HOME/install_prep

#install MPICH
cd $HOME/install_prep
wget https://www.mpich.org/static/downloads/4.1.2/mpich-4.1.2.tar.gz
tar -zxvf mpich-4.1.2.tar.gz
cd mpich-4.1.2/
./configure --prefix=$HOME/opt/mpich
make
make install
echo 'export PATH=$HOME/opt/mpich/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#install a new Perl
cd $HOME/install_prep
wget https://www.cpan.org/src/5.0/perl-5.38.0.tar.gz --no-check-certificate
tar -zxvf perl-5.38.0.tar.gz
cd perl-5.38.0
./Configure -d -Dprefix=$HOME/opt/perl5
make
make install
echo 'export PATH=$HOME/opt/perl5/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#install MAKER with MPI support
cd $HOME/opt
wget http://weatherby.genetics.utah.edu/maker_downloads/AD6E/A1B0/C2B7/558563CFD35E343BA1B888148294/maker-3.01.04.tgz
tar -zxvf maker-3.01.04.tgz
rm -rf maker-3.01.04.tgz
cd maker/src
perl Build.PL ##say yes to MPI question
./Build installdeps ##just hit 'enter' to accept any defaults
### if you get errors mentioning '--no-check-certificate', run the command 'cpan' in your terminal.
### If it asks to set up everything automatically, say 'yes'.
### Next, whil einside cpan, run the command 'o conf init pushy_https'.
### Say 'no' to the question it asks, and then run 'o conf commit' to save changes and 'q' to exit.
### Then retry the './Build installdeps' command
./Build installexes
./Build install
echo 'export PATH=$HOME/opt/maker/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#test MAKER
cd $HOME/install_prep
mpiexec -n 10 maker --help ##should print a single help message
cp -R $HOME/opt/maker/data ./test
cd test
maker -CTL
mpiexec -n 10 maker --protein dpp_protein.fasta --genome dpp_contig.fasta --est dpp_est.fasta ##should run MAKER under MPI



?Carson


On Sep 12, 2023, at 2:22 PM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

Hi Carson,

I have tried installing MPICH and OpenMPI various ways now and am still having issues. MAKER appears to be running when I am not using MPI, but I am attaching the maker output (with -debug flag) and here is the error I get when trying to multithread.

===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   PID 35952 RUNNING AT ip-172-31-12-194
=   EXIT CODE: 9
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions

On Thu, Aug 24, 2023 at 6:26?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Once you install MPICH or OpenMPI you must launch MAKER through mpiexec and speciffy the CPU count to MPI. On a single instance you just give the CPU count off that instance, but you can also go across instances using Amazon?s Parallel Cluster.

Here is an example ?> https://efish.integrativebiology.msu.edu/2015/02/10/annotate.html
That example uses StarCluster which is now deprecated, but the MPI install and MAKER run still apply.

Here is another example of using MPi ?> https://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_WGS_Assembly_and_Annotation_Winter_School_2018#MPI_Support

Note that for OpenMPI you have to set the LD_PRELOAD environmental variable before launch.
export LD_PRELOAD=/usr/lib64/openmpi-1.10/lib/libmpi.so

?Carson


On Aug 18, 2023, at 2:53 PM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

I am working on an AWS EC2 instance that runs Amazon Linux, and I have tried a couple of installs (MPICH and Open MPI), neither of which worked. I don't have any installed on my current instance.

On Tue, Aug 15, 2023 at 5:08?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Do you already have MPI installed on your system, and if so which MPI and what version (i.e. MPICH, MVAPICH2, Intel MPI, Open MPI, etc)?

?Carson


On Aug 15, 2023, at 9:34 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

Hi Carson,

Excellent, thanks so much! I have that part working. The multithreading is still eluding me. Do you have a recommended method of installing a compatible version of MPI?

Thanks,

Hayley

On Fri, Aug 11, 2023 at 4:04?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
The error is coming from Augustus. There is a problem with the species file you selected. Or you put it in the wrong place.

This is the error ?>
Could not find the config file /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/BUSCO_evans_trout_hap1/BUSCO_evans_trout_hap1_parameters.cfg

The species info must exist under this base directory by default (it?s where you let MAKER install Augustus) ?>  /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/

You can also place the species files somewhere else but you need to set the AUGUSTUS_CONFIG_PATH so Augustus knows where to look.

Example (in your ~/.bash_profile):
export AUGUSTUS_CONFIG_PATH=$HOME/muy_augustus_species

Thanks,
Carson



On Aug 11, 2023, at 7:20 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

Hi Carson,

Sure thing! Sorry for the delay, I was on vacation. I reran with just a single scaffold. Here is the STDERR.

On Mon, Jul 31, 2023 at 12:06?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Can you send me the STDERR from the maker run? If you don?t have it, run maker again with the output from the screen redirected to a file. Example ?> maker &> all_output.txt

--Carson

Sent from my iPhone

On Jul 31, 2023, at 10:04 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

?
Hi!

I am trying to get a fresh install of MAKER to work for me and am having a few issues.

1. I got MAKER installed (I thought) and now the log is saying all contigs failed. See attached log.
2. Having tried several versions and methods of installation, I cannot get multithreading to work.

Could you help me work through these issues?
Thanks,

Hayley
--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<PGA_assembly_hap1_master_datastore_index.log>
_______________________________________________
maker-devel mailing list
maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>
http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org


--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<all_output.txt>



--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>




--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>




--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<all_output.txt>



--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>


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From jdc81 at psu.edu  Wed Sep 27 10:37:34 2023
From: jdc81 at psu.edu (Cerda, Juan Daniel)
Date: Wed, 27 Sep 2023 16:37:34 -0000
Subject: [maker-devel] Issues with AED_cdf_generator.pl
Message-ID: <CH2PR02MB65240E49C43899CDAE1740BBB2C2A@CH2PR02MB6524.namprd02.prod.outlook.com>

Hello,

I am trying to compare annotations with some gff file not created by maker, but ever time run the AED script with non-Maker annotations i get the following error:

Illegal division by zero at /scratch/users/juan/biotools/AED_cdf_generator.pl line 49.

I am hoping you can help out with this. Any ideas why this happens?

Thanks!


--
Juan D. Cerda
Graduate Student in Bioinformatics and Genomics
Huck Institute of the Life Sciences
Pennsylvania State University
State College, Pennsylvania
[cid:24473bc3-f364-4cac-b1c4-ea589afdf26a]
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From carson.holt at genetics.utah.edu  Wed Sep 13 09:15:39 2023
From: carson.holt at genetics.utah.edu (Carson Hinton Holt)
Date: Wed, 13 Sep 2023 15:15:39 +0000
Subject: [maker-devel] MAKER Commercial User -- Install and run issues
In-Reply-To: <CAGkx0YPErowGLfEkMDf-dkt-66HheciEqTE7n3BbTaKeL9g6iA@mail.gmail.com>
References: <CAGkx0YNmZe8ZAu9uD_vqyuxDUhNAA-hxTa2sei4jJUZLt-1nMg@mail.gmail.com>
 <6692AA58-9051-4012-96DE-56F5D679CD8F@gmail.com>
 <CAGkx0YMaKMGxtZOSfCidC3yhiycmdcAZykcD3JwXVn1-TrGfVA@mail.gmail.com>
 <D9DEC68B-9377-419B-A1B9-52DEAE865178@gmail.com>
 <CAGkx0YMWcp=v6qPJcYAFh-zRUSk4vXCqakQz2QXqHNQCfs8Nxw@mail.gmail.com>
 <7070D186-7E18-4DBC-BABD-3D6170EB4A70@gmail.com>
 <CAGkx0YOvJYpXHdFfX=OKOHp851fqGXMyYmRLYM1=fcZp36_Q6g@mail.gmail.com>
 <B81D93F9-FC9C-4F40-9739-5533B7F3E149@gmail.com>
 <CAGkx0YPErowGLfEkMDf-dkt-66HheciEqTE7n3BbTaKeL9g6iA@mail.gmail.com>
Message-ID: <9FF1AEEE-FA74-4821-8BC5-71E067EF5A7B@genetics.utah.edu>

The seg fault is being thrown by MPI itself. That is why MAKER can run on its own.

There are several things you can check (or just do them all as a sort of nuclear option):
*First make sure you are not using conda or miniconda environments. This can create subtle conflicts between executables and libraries as condo/minicanda will try to override some paths.
*Next you may need to install OpenMPI or MPICH yourself (i.e. don?t use apt-get or other package install managers). https://www.mpich.org/downloads/.
*Lastly you can also install your own perl and override the system perl. Depends on your system configuration, i.e. if using CentOS 7, your perl is very out of date with other libraries that may have been updated on the system.

After compiling everything and installing, you will want to reinstall MAKER (the new MPI install must recompile it?s bindings to the application bering run).


Here is a step by step (comments marked with ?#'):
#create a directory to prep install
mkdir $HOME/install_prep

#install MPICH
cd $HOME/install_prep
wget https://www.mpich.org/static/downloads/4.1.2/mpich-4.1.2.tar.gz
tar -zxvf mpich-4.1.2.tar.gz
cd mpich-4.1.2/
./configure --prefix=$HOME/opt/mpich
make
make install
echo 'export PATH=$HOME/opt/mpich/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#install a new Perl
cd $HOME/install_prep
wget https://www.cpan.org/src/5.0/perl-5.38.0.tar.gz --no-check-certificate
tar -zxvf perl-5.38.0.tar.gz
cd perl-5.38.0
./Configure -d -Dprefix=$HOME/opt/perl5
make
make install
echo 'export PATH=$HOME/opt/perl5/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#install MAKER with MPI support
cd $HOME/opt
wget http://weatherby.genetics.utah.edu/maker_downloads/AD6E/A1B0/C2B7/558563CFD35E343BA1B888148294/maker-3.01.04.tgz
tar -zxvf maker-3.01.04.tgz
rm -rf maker-3.01.04.tgz
cd maker/src
perl Build.PL ##say yes to MPI question
./Build installdeps ##just hit 'enter' to accept any defaults
### if you get errors mentioning '--no-check-certificate', run the command 'cpan' in your terminal.
### If it asks to set up everything automatically, say 'yes'.
### Next, whil einside cpan, run the command 'o conf init pushy_https'.
### Say 'no' to the question it asks, and then run 'o conf commit' to save changes and 'q' to exit.
### Then retry the './Build installdeps' command
./Build installexes
./Build install
echo 'export PATH=$HOME/opt/maker/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#test MAKER
cd $HOME/install_prep
mpiexec -n 10 maker --help ##should print a single help message
cp -R $HOME/opt/maker/data ./test
cd test
maker -CTL
mpiexec -n 10 maker --protein dpp_protein.fasta --genome dpp_contig.fasta --est dpp_est.fasta ##should run MAKER under MPI



?Carson


On Sep 12, 2023, at 2:22 PM, Hayley Mangelson <hayley at phasegenomics.com> wrote:

Hi Carson,

I have tried installing MPICH and OpenMPI various ways now and am still having issues. MAKER appears to be running when I am not using MPI, but I am attaching the maker output (with -debug flag) and here is the error I get when trying to multithread.

===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   PID 35952 RUNNING AT ip-172-31-12-194
=   EXIT CODE: 9
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions

On Thu, Aug 24, 2023 at 6:26?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Once you install MPICH or OpenMPI you must launch MAKER through mpiexec and speciffy the CPU count to MPI. On a single instance you just give the CPU count off that instance, but you can also go across instances using Amazon?s Parallel Cluster.

Here is an example ?> https://efish.integrativebiology.msu.edu/2015/02/10/annotate.html
That example uses StarCluster which is now deprecated, but the MPI install and MAKER run still apply.

Here is another example of using MPi ?> https://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_WGS_Assembly_and_Annotation_Winter_School_2018#MPI_Support

Note that for OpenMPI you have to set the LD_PRELOAD environmental variable before launch.
export LD_PRELOAD=/usr/lib64/openmpi-1.10/lib/libmpi.so

?Carson


On Aug 18, 2023, at 2:53 PM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

I am working on an AWS EC2 instance that runs Amazon Linux, and I have tried a couple of installs (MPICH and Open MPI), neither of which worked. I don't have any installed on my current instance.

On Tue, Aug 15, 2023 at 5:08?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Do you already have MPI installed on your system, and if so which MPI and what version (i.e. MPICH, MVAPICH2, Intel MPI, Open MPI, etc)?

?Carson


On Aug 15, 2023, at 9:34 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

Hi Carson,

Excellent, thanks so much! I have that part working. The multithreading is still eluding me. Do you have a recommended method of installing a compatible version of MPI?

Thanks,

Hayley

On Fri, Aug 11, 2023 at 4:04?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
The error is coming from Augustus. There is a problem with the species file you selected. Or you put it in the wrong place.

This is the error ?>
Could not find the config file /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/BUSCO_evans_trout_hap1/BUSCO_evans_trout_hap1_parameters.cfg

The species info must exist under this base directory by default (it?s where you let MAKER install Augustus) ?>  /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/

You can also place the species files somewhere else but you need to set the AUGUSTUS_CONFIG_PATH so Augustus knows where to look.

Example (in your ~/.bash_profile):
export AUGUSTUS_CONFIG_PATH=$HOME/muy_augustus_species

Thanks,
Carson



On Aug 11, 2023, at 7:20 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

Hi Carson,

Sure thing! Sorry for the delay, I was on vacation. I reran with just a single scaffold. Here is the STDERR.

On Mon, Jul 31, 2023 at 12:06?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Can you send me the STDERR from the maker run? If you don?t have it, run maker again with the output from the screen redirected to a file. Example ?> maker &> all_output.txt

--Carson

Sent from my iPhone

On Jul 31, 2023, at 10:04 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

?
Hi!

I am trying to get a fresh install of MAKER to work for me and am having a few issues.

1. I got MAKER installed (I thought) and now the log is saying all contigs failed. See attached log.
2. Having tried several versions and methods of installation, I cannot get multithreading to work.

Could you help me work through these issues?
Thanks,

Hayley
--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<PGA_assembly_hap1_master_datastore_index.log>
_______________________________________________
maker-devel mailing list
maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>
http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org


--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<all_output.txt>



--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>




--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>




--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<all_output.txt>

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From hayley at phasegenomics.com  Tue Sep 12 14:22:36 2023
From: hayley at phasegenomics.com (Hayley Mangelson)
Date: Tue, 12 Sep 2023 16:22:36 -0400
Subject: [maker-devel] MAKER Commercial User -- Install and run issues
In-Reply-To: <B81D93F9-FC9C-4F40-9739-5533B7F3E149@gmail.com>
References: <CAGkx0YNmZe8ZAu9uD_vqyuxDUhNAA-hxTa2sei4jJUZLt-1nMg@mail.gmail.com>
 <6692AA58-9051-4012-96DE-56F5D679CD8F@gmail.com>
 <CAGkx0YMaKMGxtZOSfCidC3yhiycmdcAZykcD3JwXVn1-TrGfVA@mail.gmail.com>
 <D9DEC68B-9377-419B-A1B9-52DEAE865178@gmail.com>
 <CAGkx0YMWcp=v6qPJcYAFh-zRUSk4vXCqakQz2QXqHNQCfs8Nxw@mail.gmail.com>
 <7070D186-7E18-4DBC-BABD-3D6170EB4A70@gmail.com>
 <CAGkx0YOvJYpXHdFfX=OKOHp851fqGXMyYmRLYM1=fcZp36_Q6g@mail.gmail.com>
 <B81D93F9-FC9C-4F40-9739-5533B7F3E149@gmail.com>
Message-ID: <CAGkx0YPErowGLfEkMDf-dkt-66HheciEqTE7n3BbTaKeL9g6iA@mail.gmail.com>

Hi Carson,

I have tried installing MPICH and OpenMPI various ways now and am still
having issues. MAKER appears to be running when I am not using MPI, but I
am attaching the maker output (with -debug flag) and here is the error I
get when trying to multithread.

===================================================================================

=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES

=   PID 35952 RUNNING AT ip-172-31-12-194

=   EXIT CODE: 9

=   CLEANING UP REMAINING PROCESSES

=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES

===================================================================================

YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault
(signal 11)

This typically refers to a problem with your application.

Please see the FAQ page for debugging suggestions

On Thu, Aug 24, 2023 at 6:26?PM Carson Holt <carsonhh at gmail.com> wrote:

> Once you install MPICH or OpenMPI you must launch MAKER through mpiexec
> and speciffy the CPU count to MPI. On a single instance you just give the
> CPU count off that instance, but you can also go across instances using
> Amazon?s Parallel Cluster.
>
> Here is an example ?>
> https://efish.integrativebiology.msu.edu/2015/02/10/annotate.html
> That example uses StarCluster which is now deprecated, but the MPI install
> and MAKER run still apply.
>
> Here is another example of using MPi ?>
> https://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_WGS_Assembly_and_Annotation_Winter_School_2018#MPI_Support
>
> Note that for OpenMPI you have to set the LD_PRELOAD environmental
> variable before launch.
> export LD_PRELOAD=/usr/lib64/openmpi-1.10/lib/libmpi.so
>
> ?Carson
>
>
> On Aug 18, 2023, at 2:53 PM, Hayley Mangelson <hayley at phasegenomics.com>
> wrote:
>
> I am working on an AWS EC2 instance that runs Amazon Linux, and I have
> tried a couple of installs (MPICH and Open MPI), neither of which worked. I
> don't have any installed on my current instance.
>
> On Tue, Aug 15, 2023 at 5:08?PM Carson Holt <carsonhh at gmail.com> wrote:
>
>> Do you already have MPI installed on your system, and if so which MPI and
>> what version (i.e. MPICH, MVAPICH2, Intel MPI, Open MPI, etc)?
>>
>> ?Carson
>>
>>
>> On Aug 15, 2023, at 9:34 AM, Hayley Mangelson <hayley at phasegenomics.com>
>> wrote:
>>
>> Hi Carson,
>>
>> Excellent, thanks so much! I have that part working. The multithreading
>> is still eluding me. Do you have a recommended method of installing a
>> compatible version of MPI?
>>
>> Thanks,
>>
>> Hayley
>>
>> On Fri, Aug 11, 2023 at 4:04?PM Carson Holt <carsonhh at gmail.com> wrote:
>>
>>> The error is coming from Augustus. There is a problem with the species
>>> file you selected. Or you put it in the wrong place.
>>>
>>> This is the error ?>
>>> Could not find the config file
>>> /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/BUSCO_evans_trout_hap1/BUSCO_evans_trout_hap1_parameters.cfg
>>>
>>> The species info must exist under this base directory by default (it?s
>>> where you let MAKER install Augustus) ?>
>>>  /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/
>>>
>>> You can also place the species files somewhere else but you need to set
>>> the AUGUSTUS_CONFIG_PATH so Augustus knows where to look.
>>>
>>> Example (in your ~/.bash_profile):
>>> export AUGUSTUS_CONFIG_PATH=$HOME/muy_augustus_species
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>> On Aug 11, 2023, at 7:20 AM, Hayley Mangelson <hayley at phasegenomics.com>
>>> wrote:
>>>
>>> Hi Carson,
>>>
>>> Sure thing! Sorry for the delay, I was on vacation. I reran with just a
>>> single scaffold. Here is the STDERR.
>>>
>>> On Mon, Jul 31, 2023 at 12:06?PM Carson Holt <carsonhh at gmail.com> wrote:
>>>
>>>> Can you send me the STDERR from the maker run? If you don?t have it,
>>>> run maker again with the output from the screen redirected to a file.
>>>> Example ?> maker &> all_output.txt
>>>>
>>>> --Carson
>>>>
>>>> Sent from my iPhone
>>>>
>>>> On Jul 31, 2023, at 10:04 AM, Hayley Mangelson <
>>>> hayley at phasegenomics.com> wrote:
>>>>
>>>> ?
>>>> Hi!
>>>>
>>>> I am trying to get a fresh install of MAKER to work for me and am
>>>> having a few issues.
>>>>
>>>> 1. I got MAKER installed (I thought) and now the log is saying all
>>>> contigs failed. See attached log.
>>>> 2. Having tried several versions and methods of installation, I cannot
>>>> get multithreading to work.
>>>>
>>>> Could you help me work through these issues?
>>>> Thanks,
>>>>
>>>> Hayley
>>>> --
>>>> Hayley Mangelson
>>>> Senior Bioinformatics Lead
>>>> Phase Genomics, Inc
>>>> www.phasegenomics.com
>>>>
>>>> <PGA_assembly_hap1_master_datastore_index.log>
>>>> _______________________________________________
>>>> maker-devel mailing list
>>>> maker-devel at yandell-lab.org
>>>> http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org
>>>>
>>>>
>>>
>>> --
>>> Hayley Mangelson
>>> Senior Bioinformatics Lead
>>> Phase Genomics, Inc
>>> www.phasegenomics.com
>>>
>>> <all_output.txt>
>>>
>>>
>>>
>>
>> --
>> Hayley Mangelson
>> Senior Bioinformatics Lead
>> Phase Genomics, Inc
>> www.phasegenomics.com
>>
>>
>>
>
> --
> Hayley Mangelson
> Senior Bioinformatics Lead
> Phase Genomics, Inc
> www.phasegenomics.com
>
>
>

-- 
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com
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perl version v5.16.3
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	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::DB::RandomAccessI	/usr/local/share/perl5/Bio/DB/RandomAccessI.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::DB::SeqI	/usr/local/share/perl5/Bio/DB/SeqI.pm
	1.7.8	Bio::DescribableI	/usr/local/share/perl5/Bio/DescribableI.pm
	1.7.8	Bio::Event::EventGeneratorI	/usr/local/share/perl5/Bio/Event/EventGeneratorI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::Event::EventHandlerI	/usr/local/share/perl5/Bio/Event/EventHandlerI.pm
	1.7.8	Bio::Factory::ObjectFactory	/usr/local/share/perl5/Bio/Factory/ObjectFactory.pm
	1.7.8	Bio::Factory::ObjectFactoryI	/usr/local/share/perl5/Bio/Factory/ObjectFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Factory::SequenceFactoryI	/usr/local/share/perl5/Bio/Factory/SequenceFactoryI.pm
	1.7.8	Bio::FeatureHolderI	/usr/local/share/perl5/Bio/FeatureHolderI.pm
	1.7.8	Bio::IdentifiableI	/usr/local/share/perl5/Bio/IdentifiableI.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::LocatableSeq	/usr/local/share/perl5/Bio/LocatableSeq.pm
	1.7.8	Bio::Location::Atomic	/usr/local/share/perl5/Bio/Location/Atomic.pm
	1.7.8	Bio::Location::CoordinatePolicyI	/usr/local/share/perl5/Bio/Location/CoordinatePolicyI.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::Location::Fuzzy	/usr/local/share/perl5/Bio/Location/Fuzzy.pm
	1.7.8	Bio::Location::FuzzyLocationI	/usr/local/share/perl5/Bio/Location/FuzzyLocationI.pm
	1.7.8	Bio::Location::Simple	/usr/local/share/perl5/Bio/Location/Simple.pm
	1.7.8	Bio::Location::Split	/usr/local/share/perl5/Bio/Location/Split.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Location::SplitLocationI	/usr/local/share/perl5/Bio/Location/SplitLocationI.pm
	1.7.8	Bio::Location::WidestCoordPolicy	/usr/local/share/perl5/Bio/Location/WidestCoordPolicy.pm
	1.7.8	Bio::LocationI	/usr/local/share/perl5/Bio/LocationI.pm
	1.7.8	Bio::PrimarySeq	/usr/local/share/perl5/Bio/PrimarySeq.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::PrimarySeqI	/usr/local/share/perl5/Bio/PrimarySeqI.pm
	1.7.8	Bio::Range	/usr/local/share/perl5/Bio/Range.pm
	1.7.8	Bio::RangeI	/usr/local/share/perl5/Bio/RangeI.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Root::Exception	/usr/local/share/perl5/Bio/Root/Exception.pm
	1.7.8	Bio::Root::IO	/usr/local/share/perl5/Bio/Root/IO.pm
	1.7.8	Bio::Root::Root	/usr/local/share/perl5/Bio/Root/Root.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	1.7.8	Bio::Root::RootI	/usr/local/share/perl5/Bio/Root/RootI.pm
	1.7.8	Bio::Search::HSP::GenericHSP	/usr/local/share/perl5/Bio/Search/HSP/GenericHSP.pm
	1.7.8	Bio::Search::HSP::HSPFactory	/usr/local/share/perl5/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	1.7.8	Bio::Search::HSP::HSPI	/usr/local/share/perl5/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/cdna2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snoscan.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/HSP/PhatHSP/trnascan.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	1.7.8	Bio::Search::Hit::GenericHit	/usr/local/share/perl5/Bio/Search/Hit/GenericHit.pm
	1.7.8	Bio::Search::Hit::HitFactory	/usr/local/share/perl5/Bio/Search/Hit/HitFactory.pm
	1.7.8	Bio::Search::Hit::HitI	/usr/local/share/perl5/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/cdna2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::repeatmasker	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/snoscan.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Bio/Search/Hit/PhatHit/trnascan.pm
	1.7.8	Bio::Search::SearchUtils	/usr/local/share/perl5/Bio/Search/SearchUtils.pm
	1.7.8	Bio::SearchIO	/usr/local/share/perl5/Bio/SearchIO.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SearchIO::EventHandlerI	/usr/local/share/perl5/Bio/SearchIO/EventHandlerI.pm
	1.7.8	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl5/Bio/SearchIO/SearchResultEventBuilder.pm
	1.7.8	Bio::Seq	/usr/local/share/perl5/Bio/Seq.pm
	1.7.8	Bio::Seq::SeqFactory	/usr/local/share/perl5/Bio/Seq/SeqFactory.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::Tools::CodonTable	/usr/local/share/perl5/Bio/Tools/CodonTable.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::Tools::CodonTable	/usr/local/share/perl5/Bio/Tools/CodonTable.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::Tools::CodonTable	/usr/local/share/perl5/Bio/Tools/CodonTable.pm
	1.7.8	Bio::Tools::GFF	/usr/local/share/perl5/Bio/Tools/GFF.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::Tools::CodonTable	/usr/local/share/perl5/Bio/Tools/CodonTable.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::Tools::CodonTable	/usr/local/share/perl5/Bio/Tools/CodonTable.pm
	1.7.8	Bio::Tools::GFF	/usr/local/share/perl5/Bio/Tools/GFF.pm
	1.7.8	Bio::Tools::IUPAC	/usr/local/share/perl5/Bio/Tools/IUPAC.pm
	1.7.8	Bio::Tools::CodonTable	/usr/local/share/perl5/Bio/Tools/CodonTable.pm
	1.7.8	Bio::Tools::GFF	/usr/local/share/perl5/Bio/Tools/GFF.pm
	1.7.8	Bio::Tools::IUPAC	/usr/local/share/perl5/Bio/Tools/IUPAC.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::Tools::CodonTable	/usr/local/share/perl5/Bio/Tools/CodonTable.pm
	1.7.8	Bio::Tools::GFF	/usr/local/share/perl5/Bio/Tools/GFF.pm
	1.7.8	Bio::Tools::IUPAC	/usr/local/share/perl5/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::Tools::CodonTable	/usr/local/share/perl5/Bio/Tools/CodonTable.pm
	1.7.8	Bio::Tools::GFF	/usr/local/share/perl5/Bio/Tools/GFF.pm
	1.7.8	Bio::Tools::IUPAC	/usr/local/share/perl5/Bio/Tools/IUPAC.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::Tools::CodonTable	/usr/local/share/perl5/Bio/Tools/CodonTable.pm
	1.7.8	Bio::Tools::GFF	/usr/local/share/perl5/Bio/Tools/GFF.pm
	1.7.8	Bio::Tools::IUPAC	/usr/local/share/perl5/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/home/ec2-user/PGTools/maker/bin/../lib/CGL/TranslationMachine.pm
	1.26	Carp	/usr/share/perl5/vendor_perl/Carp.pm
	1.26	Carp::Heavy	/usr/share/perl5/vendor_perl/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl5/Class/Struct.pm
	0.46	Clone	/home/ec2-user/PGTools/maker/bin/../perl/lib/Clone.pm
	UNKNOWN	Config	/usr/lib64/perl5/Config.pm
	1.7.8	Bio::SeqAnalysisParserI	/usr/local/share/perl5/Bio/SeqAnalysisParserI.pm
	1.7.8	Bio::SeqFeature::FeaturePair	/usr/local/share/perl5/Bio/SeqFeature/FeaturePair.pm
	1.7.8	Bio::SeqFeature::Generic	/usr/local/share/perl5/Bio/SeqFeature/Generic.pm
	1.7.8	Bio::SeqFeature::Similarity	/usr/local/share/perl5/Bio/SeqFeature/Similarity.pm
	1.7.8	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl5/Bio/SeqFeature/SimilarityPair.pm
	1.7.8	Bio::SeqFeatureI	/usr/local/share/perl5/Bio/SeqFeatureI.pm
	1.7.8	Bio::SeqI	/usr/local/share/perl5/Bio/SeqI.pm
	1.7.8	Bio::SeqUtils	/usr/local/share/perl5/Bio/SeqUtils.pm
	1.7.8	Bio::Tools::CodonTable	/usr/local/share/perl5/Bio/Tools/CodonTable.pm
	1.7.8	Bio::Tools::GFF	/usr/local/share/perl5/Bio/Tools/GFF.pm
	1.7.8	Bio::Tools::IUPAC	/usr/local/share/perl5/Bio/Tools/IUPAC.pm
	7.4	Bit::Vector	/usr/local/lib64/perl5/Bit/Vector.pm
	0.01	CGL::Annotation	/home/ec2-user/PGTools/maker/bin/../lib/CGL/Annotation.pm
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	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.16	Digest::base	/usr/share/perl5/vendor_perl/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	2.52	Digest::MD5	/usr/lib64/perl5/vendor_perl/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/vendor_perl/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	2.52	Digest::MD5	/usr/lib64/perl5/vendor_perl/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/vendor_perl/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	1.72	DBD::SQLite	/usr/local/lib64/perl5/DBD/SQLite.pm
	1.643	DBI	/usr/local/lib64/perl5/DBI.pm
	1.859	DB_File	/usr/local/lib64/perl5/DB_File.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	2.145	Data::Dumper	/usr/lib64/perl5/vendor_perl/Data/Dumper.pm
	0.11	Datastore::Base	/home/ec2-user/PGTools/maker/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/home/ec2-user/PGTools/maker/bin/../lib/Datastore/MD5.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.52	Digest::MD5	/usr/lib64/perl5/vendor_perl/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl5/vendor_perl/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	UNKNOWN	Dumper::XML::Game	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/home/ec2-user/PGTools/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	1.14	DynaLoader	/usr/lib64/perl5/DynaLoader.pm
	3.19	Encode	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode.pm
	2.25	Encode::Alias	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Alias.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	2.05	Encode::Config	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Config.pm
	2.08	Encode::Encoding	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/Encoding.pm
	1.03	Encode::MIME::Name	/home/ec2-user/PGTools/maker/bin/../perl/lib/Encode/MIME/Name.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	1.15	Errno	/usr/lib64/perl5/Errno.pm
	0.17015	Error	/home/ec2-user/PGTools/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/home/ec2-user/PGTools/maker/bin/../lib/Error/Simple.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	5.68	Exporter	/usr/share/perl5/vendor_perl/Exporter.pm
	5.68	Exporter::Heavy	/usr/share/perl5/vendor_perl/Exporter/Heavy.pm
	1.006002	Exporter::Tiny	/usr/local/share/perl5/Exporter/Tiny.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	UNKNOWN	Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/home/ec2-user/PGTools/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/home/ec2-user/PGTools/maker/bin/../lib/FastaDB.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	UNKNOWN	FastaFile	/home/ec2-user/PGTools/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/home/ec2-user/PGTools/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib64/perl5/Fcntl.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	2.84	File::Basename	/usr/share/perl5/File/Basename.pm
	2.23	File::Copy	/usr/share/perl5/File/Copy.pm
	1.17	File::Glob	/usr/lib64/perl5/File/Glob.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	1.20	File::NFSLock	/home/ec2-user/PGTools/maker/bin/../lib/File/NFSLock.pm
	2.09	File::Path	/usr/share/perl5/vendor_perl/File/Path.pm
	3.40	File::Spec	/usr/lib64/perl5/vendor_perl/File/Spec.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	3.40	File::Spec::Unix	/usr/lib64/perl5/vendor_perl/File/Spec/Unix.pm
	0.2301	File::Temp	/usr/share/perl5/vendor_perl/File/Temp.pm
	1.09	File::Which	/home/ec2-user/PGTools/maker/bin/../lib/File/Which.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	2.02	FileHandle	/usr/share/perl5/FileHandle.pm
	1.51	FindBin	/usr/share/perl5/FindBin.pm
	UNKNOWN	GFFDB	/home/ec2-user/PGTools/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/home/ec2-user/PGTools/maker/bin/../lib/GI.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	2.4	Getopt::Long	/usr/share/perl5/vendor_perl/Getopt/Long.pm
	1.25_06	IO	/usr/lib64/perl5/IO.pm
	1.16	IO::File	/usr/lib64/perl5/IO/File.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	1.33	IO::Handle	/usr/lib64/perl5/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib64/perl5/IO/Seekable.pm
	1.21	IO::Select	/usr/lib64/perl5/IO/Select.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	1.34	IO::Socket	/usr/lib64/perl5/IO/Socket.pm
	1.33	IO::Socket::INET	/usr/lib64/perl5/IO/Socket/INET.pm
	1.24	IO::Socket::UNIX	/usr/lib64/perl5/IO/Socket/UNIX.pm
	1.12	IPC::Open3	/usr/share/perl5/IPC/Open3.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.86	Inline	/usr/local/share/perl5/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl5/Inline/denter.pm
	UNKNOWN	Iterator	/home/ec2-user/PGTools/maker/bin/../lib/Iterator.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	UNKNOWN	Iterator::Any	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/home/ec2-user/PGTools/maker/bin/../lib/Iterator/GFF3.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	0.430	List::MoreUtils	/usr/local/share/perl5/List/MoreUtils.pm
	0.430	List::MoreUtils::PP	/usr/local/share/perl5/List/MoreUtils/PP.pm
	1.63	List::Util	/usr/local/lib64/perl5/List/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	MAKER::ConfigData	/home/ec2-user/PGTools/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.30	POSIX	/usr/lib64/perl5/POSIX.pm
	0.01	Parallel::Application::MPI	/home/ec2-user/PGTools/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.03	Perl::Unsafe::Signals	/usr/local/lib64/perl5/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/home/ec2-user/PGTools/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/home/ec2-user/PGTools/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/home/ec2-user/PGTools/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/home/ec2-user/PGTools/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/home/ec2-user/PGTools/maker/bin/../lib/Process/MpiTiers.pm
	1.63	Scalar::Util	/usr/local/lib64/perl5/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl5/SelectSaver.pm
	UNKNOWN	Shadower	/home/ec2-user/PGTools/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
	1.9725	Time::HiRes	/usr/lib64/perl5/vendor_perl/Time/HiRes.pm
	5.21	URI::Escape	/home/ec2-user/PGTools/maker/bin/../perl/lib/URI/Escape.pm
	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	0.19	attributes	/usr/lib64/perl5/attributes.pm
	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	UNKNOWN	SimpleCluster	/home/ec2-user/PGTools/maker/bin/../lib/SimpleCluster.pm
	2.010	Socket	/usr/lib64/perl5/vendor_perl/Socket.pm
	UNKNOWN	SpaceBase	/home/ec2-user/PGTools/maker/bin/../lib/SpaceBase.pm
	2.45	Storable	/usr/lib64/perl5/vendor_perl/Storable.pm
	1.07	Symbol	/usr/share/perl5/Symbol.pm
	1.16	Sys::Hostname	/usr/lib64/perl5/Sys/Hostname.pm
	0.23	Sys::SigAction	/usr/local/share/perl5/Sys/SigAction.pm
	UNKNOWN	Sys::SigAction::Alarm	/usr/local/share/perl5/Sys/SigAction/Alarm.pm
	3.01	Term::ANSIColor	/usr/share/perl5/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl5/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl5/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl5/Tie/StdHandle.pm
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	UNKNOWN	Widget	/home/ec2-user/PGTools/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/home/ec2-user/PGTools/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/home/ec2-user/PGTools/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::cdna2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/cdna2genome.pm
	UNKNOWN	Widget::exonerate::est2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/home/ec2-user/PGTools/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/home/ec2-user/PGTools/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
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	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
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	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	UNKNOWN	Widget::formater	/home/ec2-user/PGTools/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/home/ec2-user/PGTools/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::snoscan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/snoscan.pm
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	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
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	1.00	integer	/usr/share/perl5/integer.pm
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	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	1.27	feature	/usr/share/perl5/feature.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	Widget::tblastx	/home/ec2-user/PGTools/maker/bin/../lib/Widget/tblastx.pm
	UNKNOWN	Widget::trnascan	/home/ec2-user/PGTools/maker/bin/../lib/Widget/trnascan.pm
	0.16	XSLoader	/usr/share/perl5/XSLoader.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
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	1.01	locale	/usr/share/perl5/locale.pm
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	2.18	base	/usr/share/perl5/base.pm
	1.04	bytes	/usr/share/perl5/bytes.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
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	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
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	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	UNKNOWN	clean	/home/ec2-user/PGTools/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/home/ec2-user/PGTools/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/home/ec2-user/PGTools/maker/bin/../lib/compare.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	1.18	overload	/usr/share/perl5/overload.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	1.18	overload	/usr/share/perl5/overload.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	1.27	constant	/usr/share/perl5/vendor_perl/constant.pm
	UNKNOWN	ds_utility	/home/ec2-user/PGTools/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/home/ec2-user/PGTools/maker/bin/../lib/exonerate/splice_info.pm
	1.27	feature	/usr/share/perl5/feature.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	strict	/usr/share/perl5/strict.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	0.36	forks	/usr/local/lib64/perl5/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib64/perl5/forks/Devel/Symdump.pm
	0.36	forks::shared	/usr/local/lib64/perl5/forks/shared.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.02	vars	/usr/share/perl5/vars.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	0.36	forks::signals	/usr/local/lib64/perl5/forks/signals.pm
	1.00	integer	/usr/share/perl5/integer.pm
	0.63	lib	/usr/lib64/perl5/lib.pm
	1.01	locale	/usr/share/perl5/locale.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	strict	/usr/share/perl5/strict.pm
	UNKNOWN	maker::auto_annotator	/home/ec2-user/PGTools/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/home/ec2-user/PGTools/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/home/ec2-user/PGTools/maker/bin/../lib/maker/quality_index.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm










	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	UNKNOWN	maker::sens_spec	/home/ec2-user/PGTools/maker/bin/../lib/maker/sens_spec.pm
	1.18	overload	/usr/share/perl5/overload.pm
	0.02	overloading	/usr/share/perl5/overloading.pm
	0.225	parent	/usr/share/perl5/vendor_perl/parent.pm
	UNKNOWN	polisher	/home/ec2-user/PGTools/maker/bin/../lib/polisher.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm










	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm
	UNKNOWN	polisher::exonerate	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::altest	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/altest.pm
	UNKNOWN	polisher::exonerate::est	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/home/ec2-user/PGTools/maker/bin/../lib/polisher/exonerate/protein.pm


	UNKNOWN	repeat_mask_seq	/home/ec2-user/PGTools/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/home/ec2-user/PGTools/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/home/ec2-user/PGTools/maker/bin/../lib/shadow_AED.pm
	1.06	sigtrap	/usr/share/perl5/sigtrap.pm
	1.07	strict	/usr/share/perl5/strict.pm
	1.92	threads	/usr/local/lib64/perl5/forks.pm
	1.39	threads::shared	/usr/local/lib64/perl5/forks/shared.pm
	1.09	utf8	/usr/share/perl5/utf8.pm
	1.02	vars	/usr/share/perl5/vars.pm
	0.9930	version	/home/ec2-user/PGTools/maker/bin/../perl/lib/version.pm
	0.9930	version::regex	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/regex.pm
	0.9930	version::vxs	/home/ec2-user/PGTools/maker/bin/../perl/lib/version/vxs.pm
	1.13	warnings	/usr/share/perl5/warnings.pm
	1.02	warnings::register	/usr/share/perl5/warnings/register.pm


STATUS: Parsing control files...
Calling GI::load_control_files at /home/ec2-user/PGTools/maker/bin/maker line 452.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 463.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 465.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::new_instance_temp at /home/ec2-user/PGTools/maker/bin/maker line 493.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::mount_check at /home/ec2-user/PGTools/maker/bin/maker line 495.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 483.
STATUS: Processing and indexing input FASTA files...
Calling GI::s_abs_path at /home/ec2-user/PGTools/maker/bin/maker line 519.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::s_abs_path at /home/ec2-user/PGTools/maker/bin/maker line 519.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::s_abs_path at /home/ec2-user/PGTools/maker/bin/maker line 519.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::set_global_temp at /home/ec2-user/PGTools/maker/bin/maker line 500.
Calling GI::s_abs_path at /home/ec2-user/PGTools/maker/bin/maker line 519.
Calling GI::s_abs_path at /home/ec2-user/PGTools/maker/bin/maker line 519.
Calling List::Util::shuffle at /home/ec2-user/PGTools/maker/bin/maker line 529.
Calling GI::split_db at /home/ec2-user/PGTools/maker/bin/maker line 610.
Calling GI::split_db at /home/ec2-user/PGTools/maker/bin/maker line 610.
Calling GI::split_db at /home/ec2-user/PGTools/maker/bin/maker line 610.
Calling GI::split_db at /home/ec2-user/PGTools/maker/bin/maker line 610.
Calling GI::split_db at /home/ec2-user/PGTools/maker/bin/maker line 610.
Calling File::Path::rmtree at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling File::Path::rmtree at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling File::Path::rmtree at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling File::Path::rmtree at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling File::Path::rmtree at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextDef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextDef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextDef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextDef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextDef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling mkdir at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextFastaRef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling mkdir at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextFastaRef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling mkdir at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling mkdir at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextFastaRef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextFastaRef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::new at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling mkdir at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling Iterator::Any::nextFastaRef at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling system at /home/ec2-user/PGTools/maker/bin/maker line 611.
Calling system at /home/ec2-user/PGTools/maker/bin/maker line 611.

===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   PID 36959 RUNNING AT ip-172-31-12-194
=   EXIT CODE: 9
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions

From hayley at phasegenomics.com  Tue Sep 26 08:22:28 2023
From: hayley at phasegenomics.com (Hayley Mangelson)
Date: Tue, 26 Sep 2023 10:22:28 -0400
Subject: [maker-devel] MAKER Commercial User -- Install and run issues
In-Reply-To: <9FF1AEEE-FA74-4821-8BC5-71E067EF5A7B@genetics.utah.edu>
References: <CAGkx0YNmZe8ZAu9uD_vqyuxDUhNAA-hxTa2sei4jJUZLt-1nMg@mail.gmail.com>
 <6692AA58-9051-4012-96DE-56F5D679CD8F@gmail.com>
 <CAGkx0YMaKMGxtZOSfCidC3yhiycmdcAZykcD3JwXVn1-TrGfVA@mail.gmail.com>
 <D9DEC68B-9377-419B-A1B9-52DEAE865178@gmail.com>
 <CAGkx0YMWcp=v6qPJcYAFh-zRUSk4vXCqakQz2QXqHNQCfs8Nxw@mail.gmail.com>
 <7070D186-7E18-4DBC-BABD-3D6170EB4A70@gmail.com>
 <CAGkx0YOvJYpXHdFfX=OKOHp851fqGXMyYmRLYM1=fcZp36_Q6g@mail.gmail.com>
 <B81D93F9-FC9C-4F40-9739-5533B7F3E149@gmail.com>
 <CAGkx0YPErowGLfEkMDf-dkt-66HheciEqTE7n3BbTaKeL9g6iA@mail.gmail.com>
 <9FF1AEEE-FA74-4821-8BC5-71E067EF5A7B@genetics.utah.edu>
Message-ID: <CAGkx0YM9PXCGP0MXvsA3Anva3Kdz+wX94kN+YBKk-eHg0n1uYw@mail.gmail.com>

Hi Carson,

Thought I should report back that this worked! Now I am just dealing with
4/32 of my contigs failing. It looks like they are failing on the repeat
masking step. I am a bit confused as to why just a handful would fail here.
Any suggestions on how to overcome this (hopefully final) obstacle?

Thanks,

Hayley

On Wed, Sep 13, 2023 at 11:20?AM Carson Hinton Holt <
carson.holt at genetics.utah.edu> wrote:

> The seg fault is being thrown by MPI itself. That is why MAKER can run on
> its own.
>
> There are several things you can check (or just do them all as a sort of
> nuclear option):
> *First make sure you are not using conda or miniconda environments. This
> can create subtle conflicts between executables and libraries as
> condo/minicanda will try to override some paths.
> *Next you may need to install OpenMPI or MPICH yourself (i.e. don?t use
> apt-get or other package install managers).
> https://www.mpich.org/downloads/.
> *Lastly you can also install your own perl and override the system perl.
> Depends on your system configuration, i.e. if using CentOS 7, your perl is
> very out of date with other libraries that may have been updated on the
> system.
>
> After compiling everything and installing, you will want to reinstall
> MAKER (the new MPI install must recompile it?s bindings to the application
> bering run).
>
>
> Here is a step by step (comments marked with ?#'):
> #create a directory to prep install
> mkdir $HOME/install_prep
>
> #install MPICH
> cd $HOME/install_prep
> wget https://www.mpich.org/static/downloads/4.1.2/mpich-4.1.2.tar.gz
> tar -zxvf mpich-4.1.2.tar.gz
> cd mpich-4.1.2/
> ./configure --prefix=$HOME/opt/mpich
> make
> make install
> echo 'export PATH=$HOME/opt/mpich/bin:$PATH' >> ~/.bash_profile
> source ~/.bash_profile
>
> #install a new Perl
> cd $HOME/install_prep
> wget https://www.cpan.org/src/5.0/perl-5.38.0.tar.gz
> --no-check-certificate
> tar -zxvf perl-5.38.0.tar.gz
> cd perl-5.38.0
> ./Configure -d -Dprefix=$HOME/opt/perl5
> make
> make install
> echo 'export PATH=$HOME/opt/perl5/bin:$PATH' >> ~/.bash_profile
> source ~/.bash_profile
>
> #install MAKER with MPI support
> cd $HOME/opt
> wget
> http://weatherby.genetics.utah.edu/maker_downloads/AD6E/A1B0/C2B7/558563CFD35E343BA1B888148294/maker-3.01.04.tgz
> tar -zxvf maker-3.01.04.tgz
> rm -rf maker-3.01.04.tgz
> cd maker/src
> perl Build.PL ##say yes to MPI question
> ./Build installdeps ##just hit 'enter' to accept any defaults
> ### if you get errors mentioning '--no-check-certificate', run the command
> 'cpan' in your terminal.
> ### If it asks to set up everything automatically, say 'yes'.
> ### Next, whil einside cpan, run the command 'o conf init pushy_https'.
> ### Say 'no' to the question it asks, and then run 'o conf commit' to save
> changes and 'q' to exit.
> ### Then retry the './Build installdeps' command
> ./Build installexes
> ./Build install
> echo 'export PATH=$HOME/opt/maker/bin:$PATH' >> ~/.bash_profile
> source ~/.bash_profile
>
> #test MAKER
> cd $HOME/install_prep
> mpiexec -n 10 maker --help ##should print a single help message
> cp -R $HOME/opt/maker/data ./test
> cd test
> maker -CTL
> mpiexec -n 10 maker --protein dpp_protein.fasta --genome dpp_contig.fasta
> --est dpp_est.fasta ##should run MAKER under MPI
>
>
>
> ?Carson
>
>
> On Sep 12, 2023, at 2:22 PM, Hayley Mangelson <hayley at phasegenomics.com>
> wrote:
>
> Hi Carson,
>
> I have tried installing MPICH and OpenMPI various ways now and am still
> having issues. MAKER appears to be running when I am not using MPI, but I
> am attaching the maker output (with -debug flag) and here is the error I
> get when trying to multithread.
>
>
> ===================================================================================
> =   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> =   PID 35952 RUNNING AT ip-172-31-12-194
> =   EXIT CODE: 9
> =   CLEANING UP REMAINING PROCESSES
> =   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
>
> ===================================================================================
> YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault
> (signal 11)
> This typically refers to a problem with your application.
> Please see the FAQ page for debugging suggestions
>
> On Thu, Aug 24, 2023 at 6:26?PM Carson Holt <carsonhh at gmail.com> wrote:
>
>> Once you install MPICH or OpenMPI you must launch MAKER through mpiexec
>> and speciffy the CPU count to MPI. On a single instance you just give the
>> CPU count off that instance, but you can also go across instances using
>> Amazon?s Parallel Cluster.
>>
>> Here is an example ?>
>> https://efish.integrativebiology.msu.edu/2015/02/10/annotate.html
>> That example uses StarCluster which is now deprecated, but the MPI
>> install and MAKER run still apply.
>>
>> Here is another example of using MPi ?>
>> https://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_WGS_Assembly_and_Annotation_Winter_School_2018#MPI_Support
>>
>> Note that for OpenMPI you have to set the LD_PRELOAD environmental
>> variable before launch.
>> export LD_PRELOAD=/usr/lib64/openmpi-1.10/lib/libmpi.so
>>
>> ?Carson
>>
>>
>> On Aug 18, 2023, at 2:53 PM, Hayley Mangelson <hayley at phasegenomics.com>
>> wrote:
>>
>> I am working on an AWS EC2 instance that runs Amazon Linux, and I have
>> tried a couple of installs (MPICH and Open MPI), neither of which worked. I
>> don't have any installed on my current instance.
>>
>> On Tue, Aug 15, 2023 at 5:08?PM Carson Holt <carsonhh at gmail.com> wrote:
>>
>>> Do you already have MPI installed on your system, and if so which MPI
>>> and what version (i.e. MPICH, MVAPICH2, Intel MPI, Open MPI, etc)?
>>>
>>> ?Carson
>>>
>>>
>>> On Aug 15, 2023, at 9:34 AM, Hayley Mangelson <hayley at phasegenomics.com>
>>> wrote:
>>>
>>> Hi Carson,
>>>
>>> Excellent, thanks so much! I have that part working. The multithreading
>>> is still eluding me. Do you have a recommended method of installing a
>>> compatible version of MPI?
>>>
>>> Thanks,
>>>
>>> Hayley
>>>
>>> On Fri, Aug 11, 2023 at 4:04?PM Carson Holt <carsonhh at gmail.com> wrote:
>>>
>>>> The error is coming from Augustus. There is a problem with the species
>>>> file you selected. Or you put it in the wrong place.
>>>>
>>>> This is the error ?>
>>>> Could not find the config file
>>>> /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/BUSCO_evans_trout_hap1/BUSCO_evans_trout_hap1_parameters.cfg
>>>>
>>>> The species info must exist under this base directory by default (it?s
>>>> where you let MAKER install Augustus) ?>
>>>>  /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/
>>>>
>>>> You can also place the species files somewhere else but you need to set
>>>> the AUGUSTUS_CONFIG_PATH so Augustus knows where to look.
>>>>
>>>> Example (in your ~/.bash_profile):
>>>> export AUGUSTUS_CONFIG_PATH=$HOME/muy_augustus_species
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>> On Aug 11, 2023, at 7:20 AM, Hayley Mangelson <hayley at phasegenomics.com>
>>>> wrote:
>>>>
>>>> Hi Carson,
>>>>
>>>> Sure thing! Sorry for the delay, I was on vacation. I reran with just a
>>>> single scaffold. Here is the STDERR.
>>>>
>>>> On Mon, Jul 31, 2023 at 12:06?PM Carson Holt <carsonhh at gmail.com>
>>>> wrote:
>>>>
>>>>> Can you send me the STDERR from the maker run? If you don?t have it,
>>>>> run maker again with the output from the screen redirected to a file.
>>>>> Example ?> maker &> all_output.txt
>>>>>
>>>>> --Carson
>>>>>
>>>>> Sent from my iPhone
>>>>>
>>>>> On Jul 31, 2023, at 10:04 AM, Hayley Mangelson <
>>>>> hayley at phasegenomics.com> wrote:
>>>>>
>>>>> ?
>>>>> Hi!
>>>>>
>>>>> I am trying to get a fresh install of MAKER to work for me and am
>>>>> having a few issues.
>>>>>
>>>>> 1. I got MAKER installed (I thought) and now the log is saying all
>>>>> contigs failed. See attached log.
>>>>> 2. Having tried several versions and methods of installation, I cannot
>>>>> get multithreading to work.
>>>>>
>>>>> Could you help me work through these issues?
>>>>> Thanks,
>>>>>
>>>>> Hayley
>>>>> --
>>>>> Hayley Mangelson
>>>>> Senior Bioinformatics Lead
>>>>> Phase Genomics, Inc
>>>>> www.phasegenomics.com
>>>>>
>>>>> <PGA_assembly_hap1_master_datastore_index.log>
>>>>> _______________________________________________
>>>>> maker-devel mailing list
>>>>> maker-devel at yandell-lab.org
>>>>> http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org
>>>>>
>>>>>
>>>>
>>>> --
>>>> Hayley Mangelson
>>>> Senior Bioinformatics Lead
>>>> Phase Genomics, Inc
>>>> www.phasegenomics.com
>>>>
>>>> <all_output.txt>
>>>>
>>>>
>>>>
>>>
>>> --
>>> Hayley Mangelson
>>> Senior Bioinformatics Lead
>>> Phase Genomics, Inc
>>> www.phasegenomics.com
>>>
>>>
>>>
>>
>> --
>> Hayley Mangelson
>> Senior Bioinformatics Lead
>> Phase Genomics, Inc
>> www.phasegenomics.com
>>
>>
>>
>
> --
> Hayley Mangelson
> Senior Bioinformatics Lead
> Phase Genomics, Inc
> www.phasegenomics.com
>
> <all_output.txt>
>
>
>

-- 
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com
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From carson.holt at genetics.utah.edu  Tue Sep 26 12:04:53 2023
From: carson.holt at genetics.utah.edu (Carson Hinton Holt)
Date: Tue, 26 Sep 2023 18:04:53 +0000
Subject: [maker-devel] MAKER Commercial User -- Install and run issues
In-Reply-To: <CAGkx0YM9PXCGP0MXvsA3Anva3Kdz+wX94kN+YBKk-eHg0n1uYw@mail.gmail.com>
References: <CAGkx0YNmZe8ZAu9uD_vqyuxDUhNAA-hxTa2sei4jJUZLt-1nMg@mail.gmail.com>
 <6692AA58-9051-4012-96DE-56F5D679CD8F@gmail.com>
 <CAGkx0YMaKMGxtZOSfCidC3yhiycmdcAZykcD3JwXVn1-TrGfVA@mail.gmail.com>
 <D9DEC68B-9377-419B-A1B9-52DEAE865178@gmail.com>
 <CAGkx0YMWcp=v6qPJcYAFh-zRUSk4vXCqakQz2QXqHNQCfs8Nxw@mail.gmail.com>
 <7070D186-7E18-4DBC-BABD-3D6170EB4A70@gmail.com>
 <CAGkx0YOvJYpXHdFfX=OKOHp851fqGXMyYmRLYM1=fcZp36_Q6g@mail.gmail.com>
 <B81D93F9-FC9C-4F40-9739-5533B7F3E149@gmail.com>
 <CAGkx0YPErowGLfEkMDf-dkt-66HheciEqTE7n3BbTaKeL9g6iA@mail.gmail.com>
 <9FF1AEEE-FA74-4821-8BC5-71E067EF5A7B@genetics.utah.edu>
 <CAGkx0YM9PXCGP0MXvsA3Anva3Kdz+wX94kN+YBKk-eHg0n1uYw@mail.gmail.com>
Message-ID: <0EECCFD7-346C-4F53-B726-2E7779AEEAD5@genetics.utah.edu>

What does the error say? One thing you can do is run on a single thread (i.e. no mpiexec, just call maker directly - increase try count before doing this). That will run up to where the error happens, and the last thing it prints out before the error is the Repeatmasker command line used. You can then cut and paste that command to test it outside of MAKER.

?Carson

On Sep 26, 2023, at 8:22 AM, Hayley Mangelson <hayley at phasegenomics.com> wrote:

Hi Carson,

Thought I should report back that this worked! Now I am just dealing with 4/32 of my contigs failing. It looks like they are failing on the repeat masking step. I am a bit confused as to why just a handful would fail here. Any suggestions on how to overcome this (hopefully final) obstacle?

Thanks,

Hayley

On Wed, Sep 13, 2023 at 11:20?AM Carson Hinton Holt <carson.holt at genetics.utah.edu<mailto:carson.holt at genetics.utah.edu>> wrote:
The seg fault is being thrown by MPI itself. That is why MAKER can run on its own.

There are several things you can check (or just do them all as a sort of nuclear option):
*First make sure you are not using conda or miniconda environments. This can create subtle conflicts between executables and libraries as condo/minicanda will try to override some paths.
*Next you may need to install OpenMPI or MPICH yourself (i.e. don?t use apt-get or other package install managers). https://www.mpich.org/downloads/.
*Lastly you can also install your own perl and override the system perl. Depends on your system configuration, i.e. if using CentOS 7, your perl is very out of date with other libraries that may have been updated on the system.

After compiling everything and installing, you will want to reinstall MAKER (the new MPI install must recompile it?s bindings to the application bering run).


Here is a step by step (comments marked with ?#'):
#create a directory to prep install
mkdir $HOME/install_prep

#install MPICH
cd $HOME/install_prep
wget https://www.mpich.org/static/downloads/4.1.2/mpich-4.1.2.tar.gz
tar -zxvf mpich-4.1.2.tar.gz
cd mpich-4.1.2/
./configure --prefix=$HOME/opt/mpich
make
make install
echo 'export PATH=$HOME/opt/mpich/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#install a new Perl
cd $HOME/install_prep
wget https://www.cpan.org/src/5.0/perl-5.38.0.tar.gz --no-check-certificate
tar -zxvf perl-5.38.0.tar.gz
cd perl-5.38.0
./Configure -d -Dprefix=$HOME/opt/perl5
make
make install
echo 'export PATH=$HOME/opt/perl5/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#install MAKER with MPI support
cd $HOME/opt
wget http://weatherby.genetics.utah.edu/maker_downloads/AD6E/A1B0/C2B7/558563CFD35E343BA1B888148294/maker-3.01.04.tgz
tar -zxvf maker-3.01.04.tgz
rm -rf maker-3.01.04.tgz
cd maker/src
perl Build.PL ##say yes to MPI question
./Build installdeps ##just hit 'enter' to accept any defaults
### if you get errors mentioning '--no-check-certificate', run the command 'cpan' in your terminal.
### If it asks to set up everything automatically, say 'yes'.
### Next, whil einside cpan, run the command 'o conf init pushy_https'.
### Say 'no' to the question it asks, and then run 'o conf commit' to save changes and 'q' to exit.
### Then retry the './Build installdeps' command
./Build installexes
./Build install
echo 'export PATH=$HOME/opt/maker/bin:$PATH' >> ~/.bash_profile
source ~/.bash_profile

#test MAKER
cd $HOME/install_prep
mpiexec -n 10 maker --help ##should print a single help message
cp -R $HOME/opt/maker/data ./test
cd test
maker -CTL
mpiexec -n 10 maker --protein dpp_protein.fasta --genome dpp_contig.fasta --est dpp_est.fasta ##should run MAKER under MPI



?Carson


On Sep 12, 2023, at 2:22 PM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

Hi Carson,

I have tried installing MPICH and OpenMPI various ways now and am still having issues. MAKER appears to be running when I am not using MPI, but I am attaching the maker output (with -debug flag) and here is the error I get when trying to multithread.

===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   PID 35952 RUNNING AT ip-172-31-12-194
=   EXIT CODE: 9
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions

On Thu, Aug 24, 2023 at 6:26?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Once you install MPICH or OpenMPI you must launch MAKER through mpiexec and speciffy the CPU count to MPI. On a single instance you just give the CPU count off that instance, but you can also go across instances using Amazon?s Parallel Cluster.

Here is an example ?> https://efish.integrativebiology.msu.edu/2015/02/10/annotate.html
That example uses StarCluster which is now deprecated, but the MPI install and MAKER run still apply.

Here is another example of using MPi ?> https://weatherby.genetics.utah.edu/MAKER/wiki/index.php/MAKER_Tutorial_for_WGS_Assembly_and_Annotation_Winter_School_2018#MPI_Support

Note that for OpenMPI you have to set the LD_PRELOAD environmental variable before launch.
export LD_PRELOAD=/usr/lib64/openmpi-1.10/lib/libmpi.so

?Carson


On Aug 18, 2023, at 2:53 PM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

I am working on an AWS EC2 instance that runs Amazon Linux, and I have tried a couple of installs (MPICH and Open MPI), neither of which worked. I don't have any installed on my current instance.

On Tue, Aug 15, 2023 at 5:08?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Do you already have MPI installed on your system, and if so which MPI and what version (i.e. MPICH, MVAPICH2, Intel MPI, Open MPI, etc)?

?Carson


On Aug 15, 2023, at 9:34 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

Hi Carson,

Excellent, thanks so much! I have that part working. The multithreading is still eluding me. Do you have a recommended method of installing a compatible version of MPI?

Thanks,

Hayley

On Fri, Aug 11, 2023 at 4:04?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
The error is coming from Augustus. There is a problem with the species file you selected. Or you put it in the wrong place.

This is the error ?>
Could not find the config file /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/BUSCO_evans_trout_hap1/BUSCO_evans_trout_hap1_parameters.cfg

The species info must exist under this base directory by default (it?s where you let MAKER install Augustus) ?>  /home/ec2-user/MAKERTOOLS/maker/exe/augustus/config/species/

You can also place the species files somewhere else but you need to set the AUGUSTUS_CONFIG_PATH so Augustus knows where to look.

Example (in your ~/.bash_profile):
export AUGUSTUS_CONFIG_PATH=$HOME/muy_augustus_species

Thanks,
Carson



On Aug 11, 2023, at 7:20 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

Hi Carson,

Sure thing! Sorry for the delay, I was on vacation. I reran with just a single scaffold. Here is the STDERR.

On Mon, Jul 31, 2023 at 12:06?PM Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
Can you send me the STDERR from the maker run? If you don?t have it, run maker again with the output from the screen redirected to a file. Example ?> maker &> all_output.txt

--Carson

Sent from my iPhone

On Jul 31, 2023, at 10:04 AM, Hayley Mangelson <hayley at phasegenomics.com<mailto:hayley at phasegenomics.com>> wrote:

?
Hi!

I am trying to get a fresh install of MAKER to work for me and am having a few issues.

1. I got MAKER installed (I thought) and now the log is saying all contigs failed. See attached log.
2. Having tried several versions and methods of installation, I cannot get multithreading to work.

Could you help me work through these issues?
Thanks,

Hayley
--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<PGA_assembly_hap1_master_datastore_index.log>
_______________________________________________
maker-devel mailing list
maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>
http://yandell-lab.org/mailman/listinfo/maker-devel_yandell-lab.org


--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<all_output.txt>



--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>




--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>




--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>

<all_output.txt>



--
Hayley Mangelson
Senior Bioinformatics Lead
Phase Genomics, Inc
www.phasegenomics.com<http://www.phasegenomics.com/>


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From jdc81 at psu.edu  Wed Sep 27 10:37:34 2023
From: jdc81 at psu.edu (Cerda, Juan Daniel)
Date: Wed, 27 Sep 2023 16:37:34 -0000
Subject: [maker-devel] Issues with AED_cdf_generator.pl
Message-ID: <CH2PR02MB65240E49C43899CDAE1740BBB2C2A@CH2PR02MB6524.namprd02.prod.outlook.com>

Hello,

I am trying to compare annotations with some gff file not created by maker, but ever time run the AED script with non-Maker annotations i get the following error:

Illegal division by zero at /scratch/users/juan/biotools/AED_cdf_generator.pl line 49.

I am hoping you can help out with this. Any ideas why this happens?

Thanks!


--
Juan D. Cerda
Graduate Student in Bioinformatics and Genomics
Huck Institute of the Life Sciences
Pennsylvania State University
State College, Pennsylvania
[cid:24473bc3-f364-4cac-b1c4-ea589afdf26a]
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