[maker-devel] MAKER2.23 output

[Sivaranjani Namasivayam]

Hi,

I tried running the latest version of Maker 2.23 with my dataset but with out much success.

When I run it without the mpi option I exits with a segmentation fault

STATUS: Processing and indexing input FASTA files...
Segmentation fault

So, I tried it with mpi, the run does start but I don't see any output files. I ran it with 20 cpus for close to 10 hrs

I tested this with the sample data in maker's data folder.

Input in maker_opts.ctl file

genome=/usr/local/maker/2.23/data/dpp_contig.fasta
est= /usr/local/maker/2.23/data/dpp_est.fasta
protein= /usr/local/maker/2.23/data/dpp_protein.fasta
est2genome=1

This was the command I executed

usr/local/mpich2/1.4.1p1/gcc_4.5.3/bin/mpirun -np 2 /usr/local/maker/2.23/bin/maker maker_opts.ctl maker_bopts.ctl maker_exe.ctl

The following folder with the protein sequence file gets created

dpp_contig.maker.output

But I can't see any progress after that.

Can you please tell me if I might be doing something wrong or need further details

I was able run the previous version of Maker 2.10 successfully with my dataset.

Thanks,
Ranjani


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