[maker-devel] maker-2.24 fails while preparing evidence clusters

[Carson Holt]

Have you tried 2.25 to see if the error still occurs in that version?

Thanks,
Carson



On 12-06-28 10:03 AM, "Markus Ankenbrand"
<markus.ankenbrand at stud-mail.uni-wuerzburg.de> wrote:

>Hi all,
>
>I'm using maker-2.24 to annotate contigs of a procaryotic organism. I'm
>only using coding sequences of a reference species as "altest". Without
>any obvious reason annotation fails for some contigs. It seems to have
>nothing to do with the contig length. I also tried to run maker with
>different reference ESTs and GeneMark. Depending on the setup different
>contigs fail.
>
>In case of failure, the log is:
>...
>cleaning clusters....
>total clusters:3 now processing 0
>   ...processing 0 of 3
>   ...processing 1 of 3
>total clusters:3 now processing 0
>total clusters:3 now processing 0
>   ...processing 0 of 2
>Can't call method "start" on an undefined valueERROR: Failed while
>preparing evidence clusters for annotations
>ERROR: Chunk failed at level:0, tier_type:3
>FAILED CONTIG:contig1
>
>ERROR: Chunk failed at level:7, tier_type:0
>FAILED CONTIG:contig1
>
>--Next Contig--
>...
>
>If someone has any idea how to solve this problem, help would be very
>much apriciated.
>
>Greetings,
>Markus
>
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