[maker-devel] maker-2.24 fails while preparing evidence clusters

[Markus Ankenbrand]

Hi Carson,

thanks for your response.
Version 2.25 works without any errors.
May I have a changelog for 2.25, if available?

Thanks,
Markus


Am 03.07.2012 16:12, schrieb Carson Holt:
> Have you tried 2.25 to see if the error still occurs in that version?
>
> Thanks,
> Carson
>
>
>
> On 12-06-28 10:03 AM, "Markus Ankenbrand"
> <markus.ankenbrand at stud-mail.uni-wuerzburg.de> wrote:
>
>> Hi all,
>>
>> I'm using maker-2.24 to annotate contigs of a procaryotic organism. I'm
>> only using coding sequences of a reference species as "altest". Without
>> any obvious reason annotation fails for some contigs. It seems to have
>> nothing to do with the contig length. I also tried to run maker with
>> different reference ESTs and GeneMark. Depending on the setup different
>> contigs fail.
>>
>> In case of failure, the log is:
>> ...
>> cleaning clusters....
>> total clusters:3 now processing 0
>>    ...processing 0 of 3
>>    ...processing 1 of 3
>> total clusters:3 now processing 0
>> total clusters:3 now processing 0
>>    ...processing 0 of 2
>> Can't call method "start" on an undefined valueERROR: Failed while
>> preparing evidence clusters for annotations
>> ERROR: Chunk failed at level:0, tier_type:3
>> FAILED CONTIG:contig1
>>
>> ERROR: Chunk failed at level:7, tier_type:0
>> FAILED CONTIG:contig1
>>
>> --Next Contig--
>> ...
>>
>> If someone has any idea how to solve this problem, help would be very
>> much apriciated.
>>
>> Greetings,
>> Markus
>>
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