[maker-devel] ipr_update_gff ERROR

[p sz]

First, thanks by help me on the lprevious error that I submitted.
I'm still working in the same project and I get a new error. I try interproscan with this commandline:

iprscan_wrap -i parsed_input.all.maker.proteins.fasta -email seoanezonjic at hotmail.com  -format raw

parsed_input.all.maker.proteins.fasta was generated with the tool fasta_merge. I use the output (attached in this email) and a gff file (generated by a normal run of maker, attached in this email) with the ipr_update_gff script of this way:

ipr_update_gff BAC12_Clone_Pt314B2_Lib_Pt_7Ba__organism_Pinus_taeda__0.gff sc_interpro.sh.o109053

And i get this error:
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 1.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 1.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 2.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 2.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 3.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 3.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 8.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 8.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 9.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 9.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 10.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 10.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 11.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 11.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 12.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 12.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 13.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 13.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 14.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 14.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 179, <$IN> line 15.
Use of uninitialized value $gene_id in hash element at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 181, <$IN> line 15.
Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 18.
Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 18.
Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 18.
Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 18.
Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 19.
Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 19.
Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 19.
Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 19.
Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 48.
Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 48.
Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 48.
Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 48.
Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 49.
Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 49.
Use of uninitialized value in string eq at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 69, <$IN> line 49.
Use of uninitialized value in concatenation (.) or string at /export/home_users/home/soft/maker/programs/x86_64/maker/bin/ipr_update_gff line 70, <$IN> line 49.

The gff file seems updated but i don't know if it works fine or is corrupt
Thanks in advance
 		 	   		  
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