[maker-devel] Alternate translation table?

[Carson Holt]

The alternate translation table is not currently an option.  It's one of
those things that needs to be implemented, but has not been yet.  It's also
not supported by many of the eukaryotic gene predictors MAKER uses.

I could probably get something implemented for you to test in two to three
weeks though (there are a lot of places where the translation table comes
into play).  Let me know.

--Carson



From:  Bob Freeman <bob_freeman at hms.harvard.edu>
Date:  Friday, 25 May, 2012 12:23 PM
To:  <maker-devel at yandell-lab.org>
Subject:  [maker-devel] Alternate translation table?

Hello all!

Unusual question here: I am running MAKER on a ciliate that uses a
non-standard translation table for its translation products. I haven't found
an option in the control files that I can change for the for translation of
the predicted transcripts. How or where can I go about this?

Tx,
Bob

-----------------------------------------------------
Bob Freeman, Ph.D.
Acorn Worm Informatics, Kirschner lab
Dept of Systems Biology, Alpert 524
Harvard Medical School
200 Longwood Avenue
Boston, MA  02115
617/432.2294, vox

"Sorry I'm late. Oh, God, that sounded insincere. I'm late."
-- Karen Walker, from Will and Grace





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