[maker-devel] Alternate translation table?

[Bob Freeman]

Thanks, Carson, for the update on this. No need to implement something. I'll keep it simple and translate the collected transcripts using an appropriate translation table.

-Bob

On May 28, 2012, at 8:43 AM, Carson Holt wrote:

> The alternate translation table is not currently an option.  It's one of those things that needs to be implemented, but has not been yet.  It's also not supported by many of the eukaryotic gene predictors MAKER uses.
> 
> I could probably get something implemented for you to test in two to three weeks though (there are a lot of places where the translation table comes into play).  Let me know.
> 
> --Carson
> 
> 
> 
> From: Bob Freeman <bob_freeman at hms.harvard.edu>
> Date: Friday, 25 May, 2012 12:23 PM
> To: <maker-devel at yandell-lab.org>
> Subject: [maker-devel] Alternate translation table?
> 
> Hello all!
> 
> Unusual question here: I am running MAKER on a ciliate that uses a non-standard translation table for its translation products. I haven't found an option in the control files that I can change for the for translation of the predicted transcripts. How or where can I go about this?
> 
> Tx,
> Bob
> 
> 
> _______________________________________________ maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

-----------------------------------------------------
Bob Freeman, Ph.D.
Acorn Worm Informatics, Kirschner lab
Dept of Systems Biology, Alpert 524
Harvard Medical School
200 Longwood Avenue
Boston, MA  02115
617/432.2294, vox

"Sorry I'm late. Oh, God, that sounded insincere. I'm late."
	-- Karen Walker, from Will and Grace





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