[maker-devel] maker mpi failed

Dian "Oscar" Jiao jiao at tacc.utexas.edu
Thu Oct 4 14:42:52 MDT 2012


Hi, I was trying to run maker 2.26. It was compiled with MPI. The non-mpi executable works just fine. But I got the error below while running mpirun –n maker ……

What is this Iterator::Fasta::skip_file? Any idea what is going on here?

Oscar

STATUS: Processing and indexing input FASTA files...
STATUS: Setting up database for any GFF3 input...
A data structure will be created for you at:
/work/02045/jiao/modules/Maker-GMOD/maker2.26/data/dpp_contig.maker.output/dpp_contig_datastore

To access files for individual sequences use the datastore index:
/work/02045/jiao/modules/Maker-GMOD/maker2.26/data/dpp_contig.maker.output/dpp_contig_master_datastore_index.log

ERROR: Log file does not exist in Iterator::Fasta::skip_file
MPI process (rank: 8) terminated unexpectedly on c341-213.ls4.tacc.utexas.edu
Exit code -5 signaled from c341-213

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