[maker-devel] Conensus gene model

Parul Kudtarkar parulk at caltech.edu
Fri Oct 12 15:46:21 MDT 2012


Hi,

We are using snap(training set[hmm file] generated using est,protein and
contig file), agustus,genemarkE(we ran it outside maker and have gff3 file
as input). The output that we get is combination of various
gene-predictors and evidences. I have attached sample result file. What
would you recommend to get consensus result set? Bootstrapping the
resulting gff3 file (rerunning maker)?

Thanks,
Parul Kudtarkar
--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org
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