[maker-devel] Conensus gene model

[Parul Kudtarkar]

Hello,

Please advice on the aforementioned query?

Thanks,
Parul Kudtarkar
---------------------------- Original Message ----------------------------
Subject: [maker-devel] Conensus gene model
From:    "Parul Kudtarkar" <parulk at caltech.edu>
Date:    Fri, October 12, 2012 2:46 pm
To:      maker-devel at yandell-lab.org
--------------------------------------------------------------------------

Hi,

We are using snap(training set[hmm file] generated using est,protein and
contig file), agustus,genemarkE(we ran it outside maker and have gff3 file
as input). The output that we get is combination of various
gene-predictors and evidences. I have attached sample result file. What
would you recommend to get consensus result set? Bootstrapping the
resulting gff3 file (rerunning maker)?

Thanks,
Parul Kudtarkar
--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
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--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org
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