[maker-devel] problem running maker

[Dian "Oscar" Jiao]

Ok. So I installed 2.26 instead. When I ran maker again I got segmentation fault with no additional message. I am using dpp_contig.fasta, dpp_est.fasta and dpp_protein.fasta.

--
Dian (Oscar) Jiao, Ph.D.,
Research Associate, Life Sciences Computing Group
Texas Advanced Computing Center
University of Texas at Austin
jiao at tacc.utexas.edu | (832) 303-1166

From: Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>>
Date: Thursday, October 4, 2012 9:03 AM
To: Oscar Jiao <jiao at tacc.utexas.edu<mailto:jiao at tacc.utexas.edu>>, "maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>" <maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>>
Subject: Re: [maker-devel] problem running maker

Try 2.26 and let me know.

Thanks,
Carson

From: "Dian \"Oscar\" Jiao" <jiao at tacc.utexas.edu<mailto:jiao at tacc.utexas.edu>>
Date: Thursday, 4 October, 2012 10:02 AM
To: Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>>, "maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>" <maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>>
Subject: Re: [maker-devel] problem running maker

2.10
--
Dian (Oscar) Jiao, Ph.D.,
Research Associate, Life Sciences Computing Group
Texas Advanced Computing Center
University of Texas at Austin
jiao at tacc.utexas.edu<mailto:jiao at tacc.utexas.edu> | (832) 303-1166

From: Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>>
Date: Thursday, October 4, 2012 7:27 AM
To: Oscar Jiao <jiao at tacc.utexas.edu<mailto:jiao at tacc.utexas.edu>>, "maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>" <maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>>
Subject: Re: [maker-devel] problem running maker

Are you trying to install 2.26 or 2.10?

--Carson


From: "Dian \"Oscar\" Jiao" <jiao at tacc.utexas.edu<mailto:jiao at tacc.utexas.edu>>
Date: Thursday, 4 October, 2012 12:04 AM
To: "maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>" <maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>>
Subject: [maker-devel] problem running maker

Hi,

I just installed maker and tried to run it with these dpp example fasta files that came with the package. However when I do "maker maker_opts.ctl maker_bopts.ctl maker_exe.ctl", I got the following errors. It looks like there are three errors: (1) defined array deprecated; (2) unknown state in Signal.pm and (3) GDBM_File (etc.) missing

The first line seems to be just warning. I got it even when I do just "maker" or "maker ctl". The control files did get generated. And what is the relationship between the three perl modules, GDBM/NDBM/SDBM_File, AnyDBM and DB_File?

Oscar

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