[maker-devel] problem running maker

Carson Holt carsonhh at gmail.com
Thu Oct 4 08:03:01 MDT 2012


Try 2.26 and let me know.

Thanks,
Carson

From:  "Dian \"Oscar\" Jiao" <jiao at tacc.utexas.edu>
Date:  Thursday, 4 October, 2012 10:02 AM
To:  Carson Holt <carsonhh at gmail.com>, "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] problem running maker

2.10
-- 
Dian (Oscar) Jiao, Ph.D.,
Research Associate, Life Sciences Computing Group
Texas Advanced Computing Center
University of Texas at Austin
jiao at tacc.utexas.edu | (832) 303-1166

From: Carson Holt <carsonhh at gmail.com>
Date: Thursday, October 4, 2012 7:27 AM
To: Oscar Jiao <jiao at tacc.utexas.edu>, "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>
Subject: Re: [maker-devel] problem running maker

Are you trying to install 2.26 or 2.10?

--Carson


From: "Dian \"Oscar\" Jiao" <jiao at tacc.utexas.edu>
Date: Thursday, 4 October, 2012 12:04 AM
To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject: [maker-devel] problem running maker

Hi, 

I just installed maker and tried to run it with these dpp example fasta
files that came with the package. However when I do "maker maker_opts.ctl
maker_bopts.ctl maker_exe.ctl", I got the following errors. It looks like
there are three errors: (1) defined array deprecated; (2) unknown state in
Signal.pm and (3) GDBM_File (etc.) missing

The first line seems to be just warning. I got it even when I do just
"maker" or "maker ctl". The control files did get generated. And what is the
relationship between the three perl modules, GDBM/NDBM/SDBM_File, AnyDBM and
DB_File? 

Oscar

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