[maker-devel] Segfault during build_fasta_index

[Carson Holt]

Run this command -->

perl -MBio::Root::Version -e 'print "$Bio::Root::Version::VERSION\n"'

What does it print?

--Carson

On 12-10-24 10:05 AM, "Fourie Joubert" <fourie.joubert at up.ac.za> wrote:

>Hi
>
>I have installed from CPAN (C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz), but
>the error persists...
>
>Does anyone know if the versions in CPAN may have been replaced recently?
>
>Best regards!
>
>Foorie
>
>
>
>
>
>
>On 10/24/2012 02:28 PM, Carson Holt wrote:
>> Yes.  Don't use the live version of BioPerl.  Use the CPAN version.  The
>> live version has a bug.
>>
>> Thanks,
>> Carson
>>
>>
>> On 12-10-24 3:07 AM, "Fourie Joubert"<fourie.joubert at up.ac.za>  wrote:
>>
>>> Hi
>>>
>>> I am getting a segfault in maker somewhere during the build_fasta_index
>>> step.
>>>
>>> I suspect it is happening after some updates I made to bioperl.
>>>
>>> Has anyone else experienced something similar, and is there a
>>> recommended bioperl version?
>>>
>>> Thanks and regards!
>>>
>>> Fourie
>>>
>>> -- 
>>> --------------
>>> Prof Fourie Joubert
>>> Bioinformatics and Computational Biology Unit
>>> Department of Biochemistry
>>> University of Pretoria
>>> fourie.joubert at up.ac.za
>>> http://www.bi.up.ac.za
>>> Tel. +27-12-420-5825
>>> Fax. +27-12-420-5800
>>>
>>> 
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>>
>
>
>-- 
>--------------
>Prof Fourie Joubert
>Bioinformatics and Computational Biology Unit
>Department of Biochemistry
>University of Pretoria
>fourie.joubert at up.ac.za
>http://www.bi.up.ac.za
>Tel. +27-12-420-5825
>Fax. +27-12-420-5800
>
>-------------------------------------------------------------------------
>This message and attachments are subject to a disclaimer. Please refer
>to www.it.up.ac.za/documentation/governance/disclaimer/ for full details.
>