[maker-devel] Segfault during build_fasta_index

[Fourie Joubert]

Hi

I have installed from CPAN (C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz), but 
the error persists...

Does anyone know if the versions in CPAN may have been replaced recently?

Best regards!

Foorie






On 10/24/2012 02:28 PM, Carson Holt wrote:
> Yes.  Don't use the live version of BioPerl.  Use the CPAN version.  The
> live version has a bug.
>
> Thanks,
> Carson
>
>
> On 12-10-24 3:07 AM, "Fourie Joubert"<fourie.joubert at up.ac.za>  wrote:
>
>> Hi
>>
>> I am getting a segfault in maker somewhere during the build_fasta_index
>> step.
>>
>> I suspect it is happening after some updates I made to bioperl.
>>
>> Has anyone else experienced something similar, and is there a
>> recommended bioperl version?
>>
>> Thanks and regards!
>>
>> Fourie
>>
>> -- 
>> --------------
>> Prof Fourie Joubert
>> Bioinformatics and Computational Biology Unit
>> Department of Biochemistry
>> University of Pretoria
>> fourie.joubert at up.ac.za
>> http://www.bi.up.ac.za
>> Tel. +27-12-420-5825
>> Fax. +27-12-420-5800
>>
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>> This message and attachments are subject to a disclaimer. Please refer
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>>
>>
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>


-- 
--------------
Prof Fourie Joubert
Bioinformatics and Computational Biology Unit
Department of Biochemistry
University of Pretoria
fourie.joubert at up.ac.za
http://www.bi.up.ac.za
Tel. +27-12-420-5825
Fax. +27-12-420-5800

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