[maker-devel] Segfault during build_fasta_index

[Carson Holt]

I'm going to write you a test script that just creates a fasta index to
see if it seg faults.  I'll send it to you later.  For now could you run
maker with the --debug flag set, apture the STDERR and send it to me.

Thanks,
Carson


On 12-10-24 10:30 AM, "Fourie Joubert" <fourie.joubert at up.ac.za> wrote:

>Hi
>
>Darn - did both, but unfortunately still segfaults...
>
>Best regards!
>
>Fourie
>
>
>On 10/24/2012 04:26 PM, Carson Holt wrote:
>> Try completely deleting the mpi_blastdb directory under the MAKER output
>> folder before restarting.  Perhaps also try reinstalling DB_File via
>>CPAN.
>>
>> --Carson
>>
>> On 12-10-24 10:24 AM, "Fourie Joubert"<fourie.joubert at up.ac.za>  wrote:
>>
>>> Hi
>>>
>>> 1.006901
>>>
>>> Regards!
>>>
>>> Fourie
>>>
>>>
>>>
>>> On 10/24/2012 04:10 PM, Carson Holt wrote:
>>>> perl -MBio::Root::Version -e 'print "$Bio::Root::Version::VERSION\n"'
>>>
>>> -- 
>>> --------------
>>> Prof Fourie Joubert
>>> Bioinformatics and Computational Biology Unit
>>> Department of Biochemistry
>>> University of Pretoria
>>> fourie.joubert at up.ac.za
>>> http://www.bi.up.ac.za
>>> Tel. +27-12-420-5825
>>> Fax. +27-12-420-5800
>>>
>>> 
>>>------------------------------------------------------------------------
>>>-
>>> This message and attachments are subject to a disclaimer. Please refer
>>> to www.it.up.ac.za/documentation/governance/disclaimer/ for full
>>>details.
>>>
>>
>
>
>-- 
>--------------
>Prof Fourie Joubert
>Bioinformatics and Computational Biology Unit
>Department of Biochemistry
>University of Pretoria
>fourie.joubert at up.ac.za
>http://www.bi.up.ac.za
>Tel. +27-12-420-5825
>Fax. +27-12-420-5800
>
>-------------------------------------------------------------------------
>This message and attachments are subject to a disclaimer. Please refer
>to www.it.up.ac.za/documentation/governance/disclaimer/ for full details.
>