[maker-devel] Segfault during build_fasta_index

[Fourie Joubert]

Hi

Really weird - as soon as I add the debug flag - no more segfault...

Best regards!

Fourie




On 10/24/2012 04:33 PM, Carson Holt wrote:
> I'm going to write you a test script that just creates a fasta index to
> see if it seg faults.  I'll send it to you later.  For now could you run
> maker with the --debug flag set, apture the STDERR and send it to me.
>
> Thanks,
> Carson
>
>
> On 12-10-24 10:30 AM, "Fourie Joubert"<fourie.joubert at up.ac.za>  wrote:
>
>> Hi
>>
>> Darn - did both, but unfortunately still segfaults...
>>
>> Best regards!
>>
>> Fourie
>>
>>
>> On 10/24/2012 04:26 PM, Carson Holt wrote:
>>> Try completely deleting the mpi_blastdb directory under the MAKER output
>>> folder before restarting.  Perhaps also try reinstalling DB_File via
>>> CPAN.
>>>
>>> --Carson
>>>
>>> On 12-10-24 10:24 AM, "Fourie Joubert"<fourie.joubert at up.ac.za>   wrote:
>>>
>>>> Hi
>>>>
>>>> 1.006901
>>>>
>>>> Regards!
>>>>
>>>> Fourie
>>>>
>>>>
>>>>
>>>> On 10/24/2012 04:10 PM, Carson Holt wrote:
>>>>> perl -MBio::Root::Version -e 'print "$Bio::Root::Version::VERSION\n"'
>>>> -- 
>>>> --------------
>>>> Prof Fourie Joubert
>>>> Bioinformatics and Computational Biology Unit
>>>> Department of Biochemistry
>>>> University of Pretoria
>>>> fourie.joubert at up.ac.za
>>>> http://www.bi.up.ac.za
>>>> Tel. +27-12-420-5825
>>>> Fax. +27-12-420-5800
>>>>
>>>>
>>>> ------------------------------------------------------------------------
>>>> -
>>>> This message and attachments are subject to a disclaimer. Please refer
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>>>> details.
>>>>
>>
>> -- 
>> --------------
>> Prof Fourie Joubert
>> Bioinformatics and Computational Biology Unit
>> Department of Biochemistry
>> University of Pretoria
>> fourie.joubert at up.ac.za
>> http://www.bi.up.ac.za
>> Tel. +27-12-420-5825
>> Fax. +27-12-420-5800
>>
>> -------------------------------------------------------------------------
>> This message and attachments are subject to a disclaimer. Please refer
>> to www.it.up.ac.za/documentation/governance/disclaimer/ for full details.
>>
>


-- 
--------------
Prof Fourie Joubert
Bioinformatics and Computational Biology Unit
Department of Biochemistry
University of Pretoria
fourie.joubert at up.ac.za
http://www.bi.up.ac.za
Tel. +27-12-420-5825
Fax. +27-12-420-5800

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