[maker-devel] model_gff question

[Michael Thon]

Under what circumstances will maker not include a gene model from the model_gff file in its final output?  It was my understanding from this post:
 https://groups.google.com/d/topic/maker-devel/Y5jSdZ1Olcc/discussion

That maker will keep or replace models in model_gff and never remove them.  I'm reannotating a fungal genome and in model_gff I'm providing the gene models originally made by the sequencing center.  I have 12006 models in the file I specify in model_gff but maker's final annotation has only 10727 models in it.  
-Mike

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