[maker-devel] Transcriptome data to gene models

[Sivaranjani Namasivayam]

Hi,

 I want to generate gene models for all my transcripts (based on just the transcript evidence). To do this I set 'est2genome to gene models' attribute to 1. I have disabled gene predictions from any another sources, that is, I do not provide protein data and turned off all gene predictors
But I find gene models are not generated for all transcripts only about half of them.

Can you tell me how maker decides which transcripts to predict models for, that is, how is it making this selective decision?

Thanks,
Ranjani
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