[maker-devel] FW: Maker-P

[Shane Brubaker]

Ok that makes sense - Thanks!


Sincerely,

Shane Brubaker
Director of BioInformatics
Solazyme, Inc.
225 Gateway Blvd.
S. San Francisco, CA 94080

From: Michael Campbell [mailto:michael.s.campbell1 at gmail.com]
Sent: Thursday, January 24, 2013 12:47 PM
To: Carson Holt
Cc: Shane Brubaker; MeiYee Law; Mark Yandell; Maker Mailing List
Subject: Re: FW: [maker-devel] Maker-P

Hi all,

I'l' take a shot at answering this one.

MAKER-P is largely a project name and represents our efforts to benchmark and improve MAKER's performance on plants. The version 2.27 release of MAKER has bug fixes and performance enhancements incorporated as a result of things we learned while bench marking MAKER on arabidopsis and maize; and the de novo annotation of sacred lotus and the algae Nannochloropsis. These changes did not impair MAKER's performance on animal genomes, so at this point we have opted not to maintain two versions of MAKER.

Other people on the project are welcome to weigh in if they would like.

Mike
On Thu, Jan 24, 2013 at 1:31 PM, Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:
I'm forwarding this to the most relevant people.

--Carson


On 13-01-24 3:17 PM, "Shane Brubaker" <sbrubaker at solazyme.com<mailto:sbrubaker at solazyme.com>> wrote:

>Hi, I heard about Maker-P at PAG.  We are working on an algae, which is
>closer to plants than just about anything else - I am wondering, would
>Maker-P be useful for us to use instead of regular Maker?
>
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--
Michael Campbell MS, RD.
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
ph:585-3543
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