[maker-devel] Maker: accessory scripts

Innocent Onsongo onson001 at umn.edu
Wed Jun 5 10:35:43 MDT 2013


I was able to successfully ran Maker and now want to converts the gene
prediction match/match_part format to annotation gene/mRNA/exon/CDS format.
I looked at the tutorial and the script gff3_preds2models
is supposed to do this conversion. How do I access this script. It is not
in /maker/2.28-beta/bin/

Also, in running gff3_preds2models <gff3 file> <pred list>  is <pred list>
the file I used for pred_gff=?

Long story short, how do I transform the GFF output from Maker to the more
traditional annotation of exon/intron?

Thanks,
Getiria
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