[maker-devel] do of the maker predicted proteins do not start with M

[Borhan, Hossein]

Hi 

I have run maker and  some of the protein predicted by maker does not start with a Methionine. I am not sure why

Here are some examples

>maker-scaffold00001-snap-gene-0.8-mRNA-1 protein AED:0.27496328928047 eAED:0.27496328928047 QI:0|0.4|0.16|0.5|1|1|6|0|453
VIIKFKTFAKASRSVELFGHEGAWARGDGYCNFKTESEKADRSVKSSCSLNIPFTYDVGR
RQYVIKGDRFCLSHNHLVMIPSPTTVIVNDQRDLTPDQLSYIINLGKYSLPFPMVTRMLS
DQFPDCRIQKPLLHRLLRKGKLQAFGGDRDAMNALINLGRSYEEHGGFFEIDIDVDCRLE
KIWLARAEGLQFASVYNDVVQIDGGAKMNAYGFVFLPVTVIDCLGKSYVVGAMAGPSAEN
KADVVKTLEYFRVKRSESVLIADDALAFRAAAVECDMVYHQCTKHYQAKIARACAGLGHE
GKEFMIKANTLVYHIFPSEDAFFAKADEYRLMFLQYGGAVKLFDDIVDKRQQLCRTFTSC
KFTGSHSSNQRAEGTISRTKRDVQPWLSRANLFEMFTHLEMIQKQQEDEAARLLSNLIRK
GKHWSDYVDSIFRERQLNSRLLSSVREVDTGLH

>snap-scaffold00087-abinit-gene-2.145-mRNA-1 protein AED:0.0539495114006514 eAED:0.0539495114006514 QI:2|1|0.6|1|1|1|5|0|817
ALSLHGTRQAFARVPPPCRRAHPAERRQPGGGMSADAPVKAGYLLKLTSSLSHWNRRYFI
VADTKLFYCKTEDDLLRRKFQGEIDLAGAQIALYTRNDETAKRFSDHHHMLGVKPAGCDR
IYILDADSEHAQKEWVACLRRHASQAPVSSPVDAAVAAAPRKDPQSVREGFLTKRGETIK
NWKMRYFVLKGNYLHYYRSIEDAQPAGSILLLGTRTTAEPKAVTGMPHSFSIARADAKRK
YMIHADSKEECDAWVGAIQQQSVFVRHAGTDSAPPEVVAPAAATPVHQQHQSRSSFGNRP
NVADDSADDDEAALDEVALSNGPPALAPHGIANTGASTGLNLKQKVSKKKRRFVTDEFDL
DLTYITENIIAMGFPAESMEAMFRNSMSDVQRFLDGRHPDAYRVYNLCSERDYDPAKFHH
NVCRFPFDDHNCPNFEDLIPLCEDIHNWLSIQSDHVVAIHCKAGKGRTGLVICAYLLYSG
AWRTARDALQFYGFVRTQDQKGVTIPSQIRYVEYFEQYMADPEILSRNNGPLVISEIFVG
RGCRPFDTVTITNMGRRMNSKDWGKYWKDALDDGLLLQLPKGACQVDKDFKVEFLASGLL
GKKTRVAGFWLHTAFIQDGVVDIDKSMIDKVNKEKDCPAFSIQVFFGGRTYVDRRCRIPV
APPQPTGPLLLSPATVRIRNADPLPVPNPSSPSESPSFSAMSSVPSLSLESLSSVSSSLS
PTTGPKAAPSPKKQDPGLDPGSPPGTVKSAPVAEAGAAPVDARSDNKAPARSCSLPHGRF
PGDVAGDGAFQQAAVQVRIAFWNNLQSEALQRRNSRL

>augustus-scaffold00087-abinit-gene-0.106-mRNA-1 protein AED:0.10935424621144 eAED:0.10935424621144 QI:1|1|0.66|1|1|1|3|0|483
STSTVFCPGLWNRVGRYVSGGLQTSPVTVPRQVRPICLATQPATDQPGYVMSSTSALVGI
GVVTVALLCRWAPILVTTSGPGSPARSSADVMRIWADHDWSAGTTSLPISQESLLAKRVL
SKSFDGLPPNLHVQDDTVPVALLRAHLNAGRHMRLRDMCPTAGACDLQGADPDHGLAPLH
MAAMRDDRSSIAYLMALGADPDAMDRAGRQYRNLSFTNFVRNARRAAEERGSTCQLPEVN
LAGLERADLDRSWAEIRRLAHEGEPVAIRGLLGAYDRSDVLDWDLDAFLTRHGHVPVNVG
DVPYAQYFGLPIQSMPLSKYVASLAPGSASYVFAKDDGICRDALQILDRFARDALPPYFV
SPAALGSDAVHFYLGNKGSGAPFHLHSDAVNLLAHGSKTWFVTPPPQSVYSRTPIGEFAA
NGTSGIESLRCEQNPGDAIYIPFDWGHAVLNNEDSTFGFAVELLNKRDSLHFLRPSSQVP
AGQ


Regards

Hossein











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