[maker-devel] maker terminated strangely

[shaohua.fan]

Hi Maker developers,

I met a problem when I was using Maker version 2.27 beta version that the
pipeline terminated in the middle of the process without any error message.


The genome I am working with is a Eukaryotic genome which is consisted by
around 6000 scaffolds. I combined de novo (Augustus and SNAP) and evidence
based (protein from a closely related species and transcriptome from the
same species) for the gene prediction (the genome is already repeat
masked). The MPI (mpich2 version 1.5) enabled maker was run on a cluster by
using SGE. I checked with the administrator of our cluster, there is no
limitation of SGE job.

The maker was run by using  mpiexec -n 48  /home/shafan/maker/bin/maker
 maker_opts.ctl maker_bopts.ctl maker_exe.ctl

I attached my maker_opt.ctl, please let me know if you need any information
for this problem.

Thanks a lot!

Shaohua
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