[maker-devel] Help on error-Repeat masker

Hud Hud hudarul at yahoo.com
Sun Mar 31 14:02:04 MDT 2013


Hello, i have some problem when runnning maker, i've got this kind of error, what could possibly go wrong here? Thnks so much


setting up GFF3 output and fasta chunks
doing repeat masking
running  repeat masker.
#--------- command -------------#
Widget::RepeatMasker:
cd /tmp/maker_WOVHsi; /home/maker-2.27-beta/maker/exe/RepeatMasker/RepeatMasker /home/maker-2.27-beta/maker/data/contig.maker.output/contig_datastore/61/0D/contig172//theVoid                             .contig172/contig172.0.simple.rb -dir /home/maker-2.27-beta/maker/data/contig.maker.output/contig_datastore/61/0D/contig172//theVoid.contig172 -pa 1 - lib /tmp/maker_WOVHsi/b1piBcWHlH
#-------------------------------#
sh: /home/maker-2.27-beta/maker/exe/RepeatMasker/RepeatMasker: /u1/local/bin/perl: bad interpreter: Permission denied
ERROR: RepeatMasker failed
--> rank=NA, hostname=Homis
ERROR: Failed while doing repeat masking
ERROR: Chunk failed at level:0, tier_type:1
FAILED CONTIG:contig172

ERROR: Chunk failed at level:2, tier_type:0
FAILED CONTIG:172

examining contents of the fasta file and run log
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