[maker-devel] failed gene prediction

[Carson Holt]

You didn't supply any evidence or HMM files for gene predictors.  Just raw
assembly data by itself is insufficient for genome annotation.

Here is some nice documentation for running MAKER  -->
http://gmod.org/wiki/MAKER_Tutorial_2012
Here is a nice overview of genome annotation ion general -->
http://fasta.bioch.virginia.edu/cshl/pdf/12/ajm12/euk_genome_annotation_revi
ew.pdf

Once you've gone through the documentation and examples, if you come across
any questions just let us know.

Thanks,
Carson


From:  "Borhan, Hossein" <Hossein.Borhan at AGR.GC.CA>
Date:  Monday, 18 March, 2013 4:40 PM
To:  <maker-devel at yandell-lab.org>
Subject:  [maker-devel] failed gene prediction

Hi

I have tried maker on a fungus genome of 45 mb with 1/3 being repeat rich.
It did not produce any prediction. I am not sure what is causing this.
Attached are  the STDERR and opts.ctl.  I appreciate your help


Hossein











_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20130318/d878c105/attachment-0003.html>