[maker-devel] Maker-no such file or directory

[Hud Hud]

Hello everyone
I have some queries, i cant run MAKER locally, so can i use MWAS on my contigs, but since my contigs too long to be run on MWAS, is it possible to combine the results after i upload and run the analysis on my contigs separately...


________________________________
 From: Carson Holt <carsonhh at gmail.com>
To: Hud Hud <hudarul at yahoo.com>; "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org> 
Sent: Tuesday, March 19, 2013 4:44 AM
Subject: Re: [maker-devel] Maker-no such file or directory
 

Does 'ls -al $home/Dorah/maker-2.27-beta/maker/data/dpp_contig.fasta'  show a valid location?
The error is just saying that the file location as written in the maker_opts.ctl file does not exist.

--Carson

From:  Hud Hud <hudarul at yahoo.com>
Reply-To:  Hud Hud <hudarul at yahoo.com>
Date:  Monday, 18 March, 2013 4:13 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] Maker-no such file or directory


I have some problem with maker
1. i try to work with the example data in data directory, but im having this kind of error..anyone can help me

error
$ maker
STATUS: Parsing control files...
dpp_contig.fasta (fasta file or fasta embeded in GFF3 file): No such file or directory at /home/Dorah/maker-2.27-beta/maker/bin/../lib/GI.pm line 186
--> rank=NA, hostname=NurKaiyisah

my maker_opts.ctl
genome=$home/Dorah/maker-2.27-beta/maker/data/dpp_contig.fasta
est=$home/Dorah/maker-2.27-beta/maker/data/dpp_est.fasta

protein=$home/Dorah/maker-2.27-beta/maker/data/dpp_protein.fasta
_______________________________________________
maker-devel mailing list maker-devel at box290.bluehost.com http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20130319/e7b531c2/attachment-0003.html>