[maker-devel] Maker-no such file or directory

[Carson Holt]

You can.  It will be very slow though as MWAS only dedicates a single cpu
per job.  So with a 5Mb max per job submission it could take a very long
time depending on the size of the assembly (emphasis on very long).

--Carson


From:  Hud Hud <hudarul at yahoo.com>
Reply-To:  Hud Hud <hudarul at yahoo.com>
Date:  Tuesday, 19 March, 2013 3:08 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] Maker-no such file or directory

Hello everyone
I have some queries, i cant run MAKER locally, so can i use MWAS on my
contigs, but since my contigs too long to be run on MWAS, is it possible to
combine the results after i upload and run the analysis on my contigs
separately...

  
 
 
  

  From: Carson Holt <carsonhh at gmail.com>
 To: Hud Hud <hudarul at yahoo.com>; "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>
 Sent: Tuesday, March 19, 2013 4:44 AM
 Subject: Re: [maker-devel] Maker-no such file or directory
  
 
Does 'ls -al $home/Dorah/maker-2.27-beta/maker/data/dpp_contig.fasta'  show
a valid location?
The error is just saying that the file location as written in the
maker_opts.ctl file does not exist.

--Carson


From:  Hud Hud <hudarul at yahoo.com>
Reply-To:  Hud Hud <hudarul at yahoo.com>
Date:  Monday, 18 March, 2013 4:13 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] Maker-no such file or directory

I have some problem with maker
1. i try to work with the example data in data directory, but im having this
kind of error..anyone can help me

error
$ maker
STATUS: Parsing control files...
dpp_contig.fasta (fasta file or fasta embeded in GFF3 file): No such file or
directory at /home/Dorah/maker-2.27-beta/maker/bin/../lib/GI.pm line 186
--> rank=NA, hostname=NurKaiyisah

my maker_opts.ctl
genome=$home/Dorah/maker-2.27-beta/maker/data/dpp_contig.fasta
est=$home/Dorah/maker-2.27-beta/maker/data/dpp_est.fasta
protein=$home/Dorah/maker-2.27-beta/maker/data/dpp_protein.fasta
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