[maker-devel] Maker consensus

[Diana LeDuc]

Dear maker developers,

I am a phD student working on de novo assembly and annotation of a bird genome.
I used Maker as annotation pipeline, which ran very well, and I obtained
different annotations with evidence from Augustus gene predictor, small EST
dataset from my organism and protein sequences from chicken, turkey and
zebrafinch. I could combine the different gff files from different scaffolds
into one gff file with annotations for the entire genome.

I now have two questions:

1. What could be the reason that I haven't gotten the protein.fasta and
trancript.fasta files

2. How can I obtain a consensus gene list of different evidences from maker?
What I would actually need is the scaffold, coordinates and annotation (gene
name) according to the 3 other bird species.

Thank you in advance.

Best regards,

Diana Le Duc

--

Max Planck Institute for Evolutionary Anthropology
Department of Evolutionary Genetics
Deutscher Platz 6
D-04103 Leipzig

Phone +49 (0)341-3550-554
www.eva.mpg.de <http://www.eva.mpg.de>
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