[maker-devel] re-annotation

[Carson Holt]

model_gff must be gene/mRNA/exon/CDS. pred_gff can be match/match_part or
gene/mRNA/exon/CDS.  Also model_gff always should make it into the final
result (unless replaced by something better) and will not be modified.  It
also affects clustering.  pref_gff will only make it into the final
results if it is supported by evidence.

‹Carson


On 11/13/13, 8:15 AM, "Kymberlie Hallsworth-Pepin"
<kpepin at genome.wustl.edu> wrote:

>
>
>Will do. Is there a difference between how the model_gff file and the
>pred_gff file use the match/match_part of CDS/mRNA designations and which
>is the best to use for model_gff input?
>
>On Wed, 13 Nov 2013, Carson Holt wrote:
>
>> So map_forward=1, will only maintain names derived from model_gff onto
>>new
>> or updated models.  Could you try either 2.28 or 2.30-beta, just to see
>>if
>> this is something that is already fixed.
>>
>> Thanks,
>> Carson
>>
>
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