[maker-devel] re-annotation

[Kymberlie Hallsworth-Pepin]

The new version and the change in the model gff to exon/cds did the trick.
thanks for the info.
Kym


On Wed, 13 Nov 2013, Carson Holt wrote:

> model_gff must be gene/mRNA/exon/CDS. pred_gff can be match/match_part or
> gene/mRNA/exon/CDS.  Also model_gff always should make it into the final
> result (unless replaced by something better) and will not be modified.  It
> also affects clustering.  pref_gff will only make it into the final
> results if it is supported by evidence.
>
> ?Carson
>
>
> On 11/13/13, 8:15 AM, "Kymberlie Hallsworth-Pepin"
> <kpepin at genome.wustl.edu> wrote:
>
>>
>>
>> Will do. Is there a difference between how the model_gff file and the
>> pred_gff file use the match/match_part of CDS/mRNA designations and which
>> is the best to use for model_gff input?
>>
>> On Wed, 13 Nov 2013, Carson Holt wrote:
>>
>>> So map_forward=1, will only maintain names derived from model_gff onto
>>> new
>>> or updated models.  Could you try either 2.28 or 2.30-beta, just to see
>>> if
>>> this is something that is already fixed.
>>>
>>> Thanks,
>>> Carson
>>>
>>
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