[maker-devel] error about DBD::SQLite::db

[Carson Holt]

Most likely an issue with your input files format.  Try this GFF3 file
validator --> http://modencode.oicr.on.ca/cgi-bin/validate_gff3_online

Also make sure you are using the most recent version of MAKER.

--Carson


From:  Jingjing Jin <jjin01 at mail.rockefeller.edu>
Date:  Sunday, September 1, 2013 4:17 AM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] error about DBD::SQLite::db

Dear all,


When I try to run maker on my test dataset, there is an error like this:

DBD::SQLite::db do failed: near ",": syntax error at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 1.
DBD::SQLite::db do failed: no such column: JUNC00000001 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 2.
DBD::SQLite::db do failed: no such column: JUNC00000002 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 3.
DBD::SQLite::db do failed: no such column: JUNC00000003 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 4.
DBD::SQLite::db do failed: no such column: JUNC00000004 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 5.
DBD::SQLite::db do failed: no such column: JUNC00000005 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 6.
DBD::SQLite::db do failed: no such column: JUNC00000006 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 7.
DBD::SQLite::db do failed: no such column: JUNC00000007 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 8.
DBD::SQLite::db do failed: no such column: JUNC00000008 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 9.
DBD::SQLite::db do failed: no such column: JUNC00000009 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 10.
DBD::SQLite::db do failed: no such column: JUNC00000010 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 11.
DBD::SQLite::db do failed: no such column: JUNC00000011 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 12.
DBD::SQLite::db do failed: no such column: JUNC00000012 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 13.
DBD::SQLite::db do failed: no such column: JUNC00000013 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 14.
DBD::SQLite::db do failed: no such column: JUNC00000014 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 15.
DBD::SQLite::db do failed: no such column: JUNC00000015 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 16.
DBD::SQLite::db do failed: no such column: JUNC00000016 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 17.
DBD::SQLite::db do failed: no such column: JUNC00000017 at
/data/apps/maker/bin/../lib/GFFDB.pm line 441, <$IN> line 18.


The JUN*** is the exteral EST I provide.

Can anyone give me some suggestions?

Thanks!

Jingjing


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