[maker-devel] thousands of array-refs in merged .gff after 'gff3_merge'

[Carson Holt]

I've never seen this.  What version of MAKER are you using?

--Carson

From:  Michael Seidl <michael.seidl at wur.nl>
Date:  Tuesday, April 22, 2014 at 8:27 AM
To:  <maker-devel at yandell-lab.org>
Subject:  [maker-devel] thousands of array-refs in merged .gff after
'gff3_merge'

Hi,

I have a question on the post-processing of my maker output. I finished a
maker run on a draft genome (231 scaffolds) without an error. To get a
merged gff3 I run ~/local_progs/maker/bin/gff3_merge -d
master_datastore_index.log. However, I realized that I contains next to gff3
conform output, thousands of lines of array refs, e.g. ARRAY(0x188a8578)).
The total number of produced scaffolds is correct, however I have my doubts
if I successfully retrieved all annotations...Could you maybe point me to a
possible solution...

Thanks in advance
Michael

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