[maker-devel] thousands of array-refs in merged .gff after 'gff3_merge'

[Carson Holt]

Could you pack up this directory for me --> /84/ED/scaffold3.1/ and upload
it here --> http://weatherby.genetics.utah.edu/cgi-bin/mwas/bug.cgi

Thanks,
Carson


From:  Michael Seidl <michael.seidl at wur.nl>
Date:  Tuesday, April 22, 2014 at 8:43 AM
To:  Carson Holt <carsonhh at gmail.com>
Cc:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] thousands of array-refs in merged .gff after
'gff3_merge'


On Tue, Apr 22, 2014 at 4:39 PM, Carson Holt <carsonhh at gmail.com> wrote:
> any

Dear Carson,

maker -version returns 2.31. Yes, also the individual scaffolds seem to
contain ARRAY refs, e.g.
find -name "*gff"  | xargs grep "ARRAY":

./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0x41f6ea0)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0xb87d888)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0xd343528)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0xb12fc48)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0xde02488)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0x8d4c698)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0x447a8a0)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0x4390048)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0xdbb4e00)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0xe3f1790)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0x438d570)
./84/ED/scaffold3.1/theVoid.scaffold3.1/evidence_6.gff:ARRAY(0xae00088

Cheers
M



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