[maker-devel] Maker error mpiexec

[rens holmer]

Hi,

I am trying to run maker using MPI, and I get an error I do not understand.

Maker version: 2.13.6
mpiexec version: mpiexec (OpenRTE) 1.6.5

When I run ./Build status it is reported that MPI is enabled.

When I run mpiexec -n 40 maker I get the following errors:

[assembly:25562] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_paffinity_hwloc: perhaps a missing symbol,
or compiled for a different version of Open MPI? (ignored)

[assembly:25563] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_paffinity_hwloc: perhaps a missing symbol,
or compiled for a different version of Open MPI? (ignored)

[assembly:25562] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_carto_auto_detect: perhaps a missing
symbol, or compiled for a different version of Open MPI? (ignored)

[assembly:25563] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_carto_auto_detect: perhaps a missing
symbol, or compiled for a different version of Open MPI? (ignored)

[assembly:25563] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_carto_file: perhaps a missing symbol, or
compiled for a different version of Open MPI? (ignored)

[assembly:25562] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_carto_file: perhaps a missing symbol, or
compiled for a different version of Open MPI? (ignored)

[assembly:25563] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_mmap: perhaps a missing symbol, or
compiled for a different version of Open MPI? (ignored)

[assembly:25563] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_posix: perhaps a missing symbol, or
compiled for a different version of Open MPI? (ignored)

[assembly:25562] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_mmap: perhaps a missing symbol, or
compiled for a different version of Open MPI? (ignored)

[assembly:25562] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_posix: perhaps a missing symbol, or
compiled for a different version of Open MPI? (ignored)

[assembly:25563] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_sysv: perhaps a missing symbol, or
compiled for a different version of Open MPI? (ignored)

[assembly:25562] mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_shmem_sysv: perhaps a missing symbol, or
compiled for a different version of Open MPI? (ignored)

--------------------------------------------------------------------------

It looks like opal_init failed for some reason; your parallel process is

likely to abort.  There are many reasons that a parallel process can

fail during opal_init; some of which are due to configuration or

environment problems.  This failure appears to be an internal failure;

here's some additional information (which may only be relevant to an

Open MPI developer):


  opal_shmem_base_select failed

  --> Returned value -1 instead of OPAL_SUCCESS

--------------------------------------------------------------------------

--------------------------------------------------------------------------



Etcetera etcetera.

However: when I search for the files reported as missing I do find them,
and I don't believe they are from a different version of MPI?

Am I using a wrong version of MPI?

Any help would be appreciated,

Sincerely,


Rens Holmer
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20140819/0709d7e6/attachment-0002.html>