[maker-devel] Problem installing maker

[Carson Holt]

You are running maker from .../maker/src/bin/.  That is just the source code. The scripts for execution will be in .../maker/bin/ after installation.  You need to use those.

Thanks,
Carson



> On Jan 13, 2014, at 12:00 PM, carlos vargas <charlos9 at gmail.com> wrote:
> 
> Hello,
> 
> I have been trying to install maker but I've been facing several issues. After installing all of the prerequisites I ran perl Build.PL and ./Build install. No issues were detected. Afterwards I tried to test maker by simply executing maker -h and got the following error:
> 
> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42.
> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42.
> 
> I found a similar thread which suggested reinstalling (which I did) but I still face the same issue. The full messages are below.
> 
> 
> Thank you for your help!
> 
> Carlos
> 
> 
> ~/software/maker/src$ sudo perl Build.PL
> 
> MAKER supports distributed parallelization via MPI.
> Would you like to configure MAKER for MPI (This
> requires that you have an MPI client installed)? [N ]
> N
> 
> Would you like to install the web interface to MAKER (MWAS) on this machine
> This requires that you be logged in as root or use sudo for './Build install'? [N ]
> N
> Created MYMETA.yml and MYMETA.json
> Creating new 'Build' script for 'MAKER' version '2.3'
> 
> 
> The file 'Build' has been created for you to finish installing MAKER.
> 
> 
> ==============================================================================
> STATUS MAKER 2.3
> ==============================================================================
> PERL Dependencies:      VERIFIED
> External Programs:      VERIFIED
> External C Libraries:   VERIFIED
> MPI SUPPORT:            DISABLED
> MWAS Web Interface:     DISABLED
> MAKER PACKAGE:          CONFIGURATION OK
> 
> 
> Important Commands:
>         ./Build installdeps     #installs missing PERL dependencies
>         ./Build installexes     #installs all missing external programs
>         ./Build install         #installs MAKER
>         ./Build status          #Shows this status menu
> 
> Other Commands:
>         ./Build repeatmasker    #installs RepeatMasker (asks for RepBase)
>         ./Build blast           #installs BLAST (NCBI BLAST+)
>         ./Build exonerate       #installs Exonerate (v2 on UNIX / v1 on Mac OSX)
>         ./Build snap            #installs SNAP
>         ./Build augustus        #installs Augustus
>         ./Build apollo          #installs Apollo
>         ./Build gbrowse         #installs GBrowse (must be root)
>         ./Build jbrowse         #installs JBrowse (MAKER copy, not web accecible)
>         ./Build webapollo       #installs WebApollo (use maker2wap to create DBs)
>         ./Build mpich2          #installs MPICH2 (but manual install recommended)
> 
> ~/software/maker/src$ sudo ./Build install
> Building MAKER
> Installing MAKER...
> Building MAKER
> Installing ~/software/maker/src/../perl/lib/MAKER/ConfigData.pm
> 
> ~/software/maker/src$ maker -h
> Can't locate MAKER/ConfigData.pm in @INC (@INC contains: ~/software/maker/src/bin/../perl/lib ~/software/maker/src/bin/../lib ~/software/maker/src/bin/../src/inc/perl/lib /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ~/software/maker/src/bin/maker line 42.
> BEGIN failed--compilation aborted at ~/software/maker/src/bin/maker line 42.
> 
> 
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