[maker-devel] Merging 2 annotations

[Carson Holt]

You can give the manually curate ones to model_gff and the other ones to
pred_gff.  Then set keep_preds=1.  The model_gff resuls always get kept
even without evidence support, the pred_gff will be kept even without
evidence support because you set keep_preds=1, but model_gff results will
take precedence.

--Carson


On 6/3/14, 2:38 AM, "Anthony Bretaudeau"
<anthony.bretaudeau at rennes.inra.fr> wrote:

>Hello,
>
>I am working on the annotation of an insect genome, and I have 2 gff
>files:
>-an automatic annotation (done by another lab, with something else than
>maker, ~20000genes)
>-a manually curated annotation (with webapollo, ~1500 genes)
>
> From this, I would like to produce a single gff combining the 2. I'd
>like to keep all the manually curated models, and only the automatic
>ones that have no equivalent in the manually curated gff.
>
>Is it possible to do something like this with maker? I guess I could
>play with the model_gff option, but I'm not sure how exactly I could use
>it.
>
>Thank you for your help
>Regards
>
>Anthony
>
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