[maker-devel] Merging 2 annotations

[Anthony Bretaudeau]

Thank you, it works fine!
A little question which is related: I set the map_forward option to 1, 
but it seems to work only for the model_gff gff. Is there a way to make 
it keep the original IDs also for the pred_gff file?
Thank you
Anthony

On 03/06/2014 18:15, Carson Holt wrote:
> You can give the manually curate ones to model_gff and the other ones to
> pred_gff.  Then set keep_preds=1.  The model_gff resuls always get kept
> even without evidence support, the pred_gff will be kept even without
> evidence support because you set keep_preds=1, but model_gff results will
> take precedence.
>
> --Carson
>
>
> On 6/3/14, 2:38 AM, "Anthony Bretaudeau"
> <anthony.bretaudeau at rennes.inra.fr> wrote:
>
>> Hello,
>>
>> I am working on the annotation of an insect genome, and I have 2 gff
>> files:
>> -an automatic annotation (done by another lab, with something else than
>> maker, ~20000genes)
>> -a manually curated annotation (with webapollo, ~1500 genes)
>>
>>  From this, I would like to produce a single gff combining the 2. I'd
>> like to keep all the manually curated models, and only the automatic
>> ones that have no equivalent in the manually curated gff.
>>
>> Is it possible to do something like this with maker? I guess I could
>> play with the model_gff option, but I'm not sure how exactly I could use
>> it.
>>
>> Thank you for your help
>> Regards
>>
>> Anthony
>>
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>