[maker-devel] errors in final gff

[Carson Holt]

Are you passing in old data via GFF3?

--Carson


On 6/18/14, 12:15 PM, "Anurag Priyam" <anurag08priyam at gmail.com> wrote:

>It's version 2.31.
>
>-- Priyam
>
>On Wed, Jun 18, 2014 at 11:41 PM, Carson Holt <carsonhh at gmail.com> wrote:
>> What MAKER version are you using?
>>
>> --Carson
>>
>>
>> On 6/18/14, 11:44 AM, "Anurag Priyam" <a.priyam at qmul.ac.uk> wrote:
>>
>>>Hi,
>>>
>>>I compiled all annotations generated by MAKER into a single GFF file
>>>using the gff3_merge script distributed with MAKER. While formatting
>>>this GFF for use with JBrowse, I found a few errors:
>>>
>>>1. Three instances where two features were assigned the same id.
>>>2. One instance where a group of three subfeatures refer to a
>>>non-existent parent.
>>>
>>>Here is the relevant portion of the GFF file:
>>>https://gist.github.com/yeban/ffaf5cd419639dd073a7
>>>
>>>I worked around the issue temporarily for the job at hand, but I am
>>>left wondering why would these errors creep in.
>>>
>>>-- Priyam
>>>
>>>_______________________________________________
>>>maker-devel mailing list
>>>maker-devel at box290.bluehost.com
>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>