[maker-devel] problem with dsindex

[kdelmore at zoology.ubc.ca]

Hi Carson,

I wanted to confirm that the interproscan scripts provided in maker are
now compatible with version 5 of the program and ask if there was any
additional documentation for the use of iprscan_wrap. It looks like that
script will run interproscan for us but I'm not sure what to supply on the
command line.

I could also run interproscan directory but am wondering if you have any
suggestions for what to include on the command line, as this has changed
in the new version. This is what I would propose:

./interproscan.sh -i test_proteins.fasta -f gff3 -goterms -iprlookup

Thanks,
Kira