[maker-devel] problem with dsindex

[Carson Holt]

The scripts that use interproscan output should work with version 5
(iprscan2gff3, ipr_update_gff, etc.). But scripts that wrap interproscan
and run it for you like iprscan_wrap only work with version 4.

Thanks,
Carson


On 5/1/14, 9:06 AM, "kdelmore at zoology.ubc.ca" <kdelmore at zoology.ubc.ca>
wrote:

>Hi Carson,
>
>I wanted to confirm that the interproscan scripts provided in maker are
>now compatible with version 5 of the program and ask if there was any
>additional documentation for the use of iprscan_wrap. It looks like that
>script will run interproscan for us but I'm not sure what to supply on the
>command line.
>
>I could also run interproscan directory but am wondering if you have any
>suggestions for what to include on the command line, as this has changed
>in the new version. This is what I would propose:
>
>./interproscan.sh -i test_proteins.fasta -f gff3 -goterms -iprlookup
>
>Thanks,
>Kira
>
>
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