[maker-devel] gff3_merge on models only for SNAP training?

[Felipe Barreto]

Hi, all,

I should have confirmed this well before starting my Maker runs, but better
now than never.

When generating a merged gff file to be used for SNAP training, is it OK to
use the default gff output from gff3_merge, which contains all protein/EST
evidence alignments (this is what I did)?  Or should I have generated a
gene models-only merged gff (using the -g flag) for training?  I assume the
Maker flag within the larger gff file will allow the subsequent scripts
(e.g. maker2zff) to ignore the other alignments, but just wanted to check.

Thanks again!

Felipe
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