[maker-devel] Mapping gene names

[Shaun Jackman]

Fantastic. Thanks, Carson. I didn’t realize that there was a point release
of MAKER. It’s not announced on the MAKER home page, which still reports Last
Software Update v2.31 (Feb 11, 2014). Where are point releases announced?

The static link for MAKER
2.31<http://yandell.topaz.genetics.utah.edu/maker_downloads/static/maker-2.31.tgz>reports
403
Forbidden. Is there a new static link for MAKER 2.31.3?

Cheers,
Shaun


On 2 May 2014 12:50, Carson Holt <carsonhh at gmail.com> wrote:

> That should already be fixed in the current 2.31.3 download. I'll also
> send you the subversion credentials in a separate e-mail.
>
> Thanks,
> Carson
>
>
> From: Shaun Jackman <sjackman at gmail.com>
> Reply-To: Shaun Jackman <sjackman at gmail.com>
> Date: Friday, May 2, 2014 at 1:40 PM
>
> To: Carson Holt <carsonhh at gmail.com>
> Cc: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject: Re: [maker-devel] Mapping gene names
>
> Hi, Carson. Do you happen to have a patch that I could test out that fixes
> the naming of the tRNA identified by tRNAscan?
>
> Is the MAKER subversion repository public, and if so, what’s its URL?
>
> Cheers,
> Shaun
>
> Shaun wrote…
>
> The integration of MAKER-P with tRNAscan is very useful. The identified
> genes are named e.g. trnascan-205522-processed-gene-0.38. tRNA genes are
> conventionally named according to the amino acid and anticodon, such as
> trnW-CCA. Would it be possible for MAKER to name or perhaps prefix the
> names with that convention?
>
> On 6 March 2014 12:58, Carson Holt <carsonhh at gmail.com> wrote:
>
>  Yes.  I’ll fix the naming.
>>
>> Thanks,
>> Carson
>>
>
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